miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 1039 0.7 0.700665
Target:  5'- gGCCcgagGCGCacagcgUUGGGCGCaaCGUUGGCGAc -3'
miRNA:   3'- -CGGua--UGCG------AACCCGCG--GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 3141 0.66 0.923958
Target:  5'- aGCCcgcUGCGCggacGcGGCGUCGggCGGCGAg -3'
miRNA:   3'- -CGGu--AUGCGaa--C-CCGCGGUa-GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 4681 0.69 0.76016
Target:  5'- uCCAcaaUGCGCUcGGGCGCCGUaaaaaGAgGGc -3'
miRNA:   3'- cGGU---AUGCGAaCCCGCGGUAg----CUgCU- -5'
6786 5' -55.3 NC_001875.2 + 5539 0.67 0.872241
Target:  5'- cGCCGUugagGCGCgcguuaaGGUGCCAgucaCGGCGAc -3'
miRNA:   3'- -CGGUA----UGCGaac----CCGCGGUa---GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 6201 0.67 0.872241
Target:  5'- cGCCGUuucaaaGCGCgcaauuGCGuCCGUCGGCGAc -3'
miRNA:   3'- -CGGUA------UGCGaacc--CGC-GGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 7376 0.72 0.608036
Target:  5'- aGCCGUACaGCcUGGGCGaucuaAUUGGCGAc -3'
miRNA:   3'- -CGGUAUG-CGaACCCGCgg---UAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 8502 0.68 0.824175
Target:  5'- cGCCGUcCGUgUGGGCGCCG-CGcACu- -3'
miRNA:   3'- -CGGUAuGCGaACCCGCGGUaGC-UGcu -5'
6786 5' -55.3 NC_001875.2 + 9030 0.66 0.923958
Target:  5'- cGCCuUGCGUUUGGaGCcGCCGgccgCGcCGGu -3'
miRNA:   3'- -CGGuAUGCGAACC-CG-CGGUa---GCuGCU- -5'
6786 5' -55.3 NC_001875.2 + 9078 0.67 0.886573
Target:  5'- cGCCAacUGCGCcUGuGGCGa-GUCGGCGc -3'
miRNA:   3'- -CGGU--AUGCGaAC-CCGCggUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 9788 0.66 0.905718
Target:  5'- cGCUccgggguGUACuuGCac-GGCGCCAUCGGCGGc -3'
miRNA:   3'- -CGG-------UAUG--CGaacCCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 14402 0.68 0.84099
Target:  5'- gGUCGgggggaGCGUaUGGGCGCCAcCGGCa- -3'
miRNA:   3'- -CGGUa-----UGCGaACCCGCGGUaGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 17833 0.82 0.184169
Target:  5'- cGCCAUGCGCgaGGGCGCCgaaaacgaggugcaGUCGGcCGAg -3'
miRNA:   3'- -CGGUAUGCGaaCCCGCGG--------------UAGCU-GCU- -5'
6786 5' -55.3 NC_001875.2 + 18282 0.72 0.608036
Target:  5'- cGCCGUGCGCgaccGCGCCGUUGAUu- -3'
miRNA:   3'- -CGGUAUGCGaaccCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 19865 0.71 0.680262
Target:  5'- gGCCGcguCGCggcgcGGGCGCCGUUuGCGAa -3'
miRNA:   3'- -CGGUau-GCGaa---CCCGCGGUAGcUGCU- -5'
6786 5' -55.3 NC_001875.2 + 20023 0.72 0.626632
Target:  5'- aGCCGUcACGCggagcagccaGGCGCCGUCGGCc- -3'
miRNA:   3'- -CGGUA-UGCGaac-------CCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 20793 0.68 0.824175
Target:  5'- aGCCGUcgACGCgcagugcgcGGGCGUCGUCGcaGCGc -3'
miRNA:   3'- -CGGUA--UGCGaa-------CCCGCGGUAGC--UGCu -5'
6786 5' -55.3 NC_001875.2 + 22816 0.69 0.797637
Target:  5'- gGCCGUGCGgUccgacGGCaCCGUCGGCGGc -3'
miRNA:   3'- -CGGUAUGCgAac---CCGcGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 24010 0.66 0.912456
Target:  5'- cGCaagGCGCaccGGGCGCgGgcUCGGCGGu -3'
miRNA:   3'- -CGguaUGCGaa-CCCGCGgU--AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 26289 0.66 0.912456
Target:  5'- cGUCAaacACGCccgUGGGCGUCAcgccaauuucgCGACGAg -3'
miRNA:   3'- -CGGUa--UGCGa--ACCCGCGGUa----------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 26613 0.68 0.818989
Target:  5'- cGCCAUGacaggcCGCccaagcaugacgaGGGCGCCA-CGGCGAc -3'
miRNA:   3'- -CGGUAU------GCGaa-----------CCCGCGGUaGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.