miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 32788 0.67 0.872241
Target:  5'- cGgCGUGgGC--GGGCGCCGcgccggcaagcUCGGCGAa -3'
miRNA:   3'- -CgGUAUgCGaaCCCGCGGU-----------AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 71885 0.68 0.831834
Target:  5'- cGCCGcauuuugGCGUUcuuguccgcccacUGGGCGUgcgCGUCGGCGAg -3'
miRNA:   3'- -CGGUa------UGCGA-------------ACCCGCG---GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 69623 0.68 0.832676
Target:  5'- uGCUGUugGCgcgcgaggUGGaCGCCGUCGGCc- -3'
miRNA:   3'- -CGGUAugCGa-------ACCcGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 14402 0.68 0.84099
Target:  5'- gGUCGgggggaGCGUaUGGGCGCCAcCGGCa- -3'
miRNA:   3'- -CGGUa-----UGCGaACCCGCGGUaGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 33211 0.68 0.84099
Target:  5'- uGCCGgcaaacgcggGCGCgggcucgccGGGCGCCGuuUCGGCGc -3'
miRNA:   3'- -CGGUa---------UGCGaa-------CCCGCGGU--AGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 40856 0.67 0.849111
Target:  5'- cGCCAagACGCgcaccgcGGGCGCCAUCc---- -3'
miRNA:   3'- -CGGUa-UGCGaa-----CCCGCGGUAGcugcu -5'
6786 5' -55.3 NC_001875.2 + 65825 0.67 0.849111
Target:  5'- uCCAcGCGCUcgUGGGCGCCcaacCGAUa- -3'
miRNA:   3'- cGGUaUGCGA--ACCCGCGGua--GCUGcu -5'
6786 5' -55.3 NC_001875.2 + 97035 0.67 0.849111
Target:  5'- cGUCGUaaACGCUUGccGGCGCaCAUuaacgagugCGACGAa -3'
miRNA:   3'- -CGGUA--UGCGAAC--CCGCG-GUA---------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 31941 0.67 0.857031
Target:  5'- cGCUcguUGCGCUcGaGGCuGCCggCGACGAc -3'
miRNA:   3'- -CGGu--AUGCGAaC-CCG-CGGuaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 8502 0.68 0.824175
Target:  5'- cGCCGUcCGUgUGGGCGCCG-CGcACu- -3'
miRNA:   3'- -CGGUAuGCGaACCCGCGGUaGC-UGcu -5'
6786 5' -55.3 NC_001875.2 + 22816 0.69 0.797637
Target:  5'- gGCCGUGCGgUccgacGGCaCCGUCGGCGGc -3'
miRNA:   3'- -CGGUAUGCgAac---CCGcGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 72939 0.69 0.797637
Target:  5'- cGCUGUcgaucugcaGCGUUUcGGGCGCCA-CGGCGc -3'
miRNA:   3'- -CGGUA---------UGCGAA-CCCGCGGUaGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 84400 0.72 0.591554
Target:  5'- aGCCGgagcuucggcggcgGCGCguauaGGUGCCAUCGGCGGa -3'
miRNA:   3'- -CGGUa-------------UGCGaac--CCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 108103 0.71 0.690488
Target:  5'- -aCAaGCGUUacagGGGCGUgAUCGACGAa -3'
miRNA:   3'- cgGUaUGCGAa---CCCGCGgUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 1039 0.7 0.700665
Target:  5'- gGCCcgagGCGCacagcgUUGGGCGCaaCGUUGGCGAc -3'
miRNA:   3'- -CGGua--UGCG------AACCCGCG--GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 41435 0.7 0.717826
Target:  5'- cCCAUgagcgugauaaacaACGCguuuaGCGCCAUCGACGAg -3'
miRNA:   3'- cGGUA--------------UGCGaacc-CGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 57297 0.69 0.76016
Target:  5'- uCCA-ACGCgaacGGGCGCgcguCGUCGGCGAc -3'
miRNA:   3'- cGGUaUGCGaa--CCCGCG----GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 44434 0.69 0.769727
Target:  5'- gGUCGUugaACGCgaucagcaaGGCGCCGUCGGCGc -3'
miRNA:   3'- -CGGUA---UGCGaac------CCGCGGUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 100593 0.69 0.779168
Target:  5'- -gCGUACGCgggccGGGCGCCGgccgCGGCc- -3'
miRNA:   3'- cgGUAUGCGaa---CCCGCGGUa---GCUGcu -5'
6786 5' -55.3 NC_001875.2 + 99755 0.69 0.788474
Target:  5'- cGCUguGUGCGUUU-GGCGCCGUUGuuGCGGg -3'
miRNA:   3'- -CGG--UAUGCGAAcCCGCGGUAGC--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.