miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 5' -54.8 NC_001875.2 + 74666 1.14 0.001304
Target:  5'- gGGCACAACAGCUCCAAGCCCGAGUGCg -3'
miRNA:   3'- -CCGUGUUGUCGAGGUUCGGGCUCACG- -5'
6787 5' -54.8 NC_001875.2 + 40225 0.76 0.406321
Target:  5'- cGGCGCAGCAaauuGC-CCAAGagCCGGGUGUg -3'
miRNA:   3'- -CCGUGUUGU----CGaGGUUCg-GGCUCACG- -5'
6787 5' -54.8 NC_001875.2 + 122804 0.74 0.489937
Target:  5'- cGGCGCGgccgGCGGCUCCAAacgcaaggcGUCCGAG-GUg -3'
miRNA:   3'- -CCGUGU----UGUCGAGGUU---------CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 107807 0.74 0.529606
Target:  5'- cGUugAACAGCcacgcgaccgCCGAGCCCGcgcccGGUGCg -3'
miRNA:   3'- cCGugUUGUCGa---------GGUUCGGGC-----UCACG- -5'
6787 5' -54.8 NC_001875.2 + 49466 0.73 0.580721
Target:  5'- cGGCGCcgUGGUUCCGcgcgcGCCCGAGUuuGCa -3'
miRNA:   3'- -CCGUGuuGUCGAGGUu----CGGGCUCA--CG- -5'
6787 5' -54.8 NC_001875.2 + 86381 0.72 0.591087
Target:  5'- cGCGCGGCuGCgggcgCCGAGCgCCGAGUucgacGCg -3'
miRNA:   3'- cCGUGUUGuCGa----GGUUCG-GGCUCA-----CG- -5'
6787 5' -54.8 NC_001875.2 + 23171 0.72 0.611903
Target:  5'- gGGCACGGCGGCUgCGGGCacggCCGuugGCg -3'
miRNA:   3'- -CCGUGUUGUCGAgGUUCG----GGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 118315 0.72 0.611903
Target:  5'- uGCaACAACGGCUgCAAGCgUGcGUGCa -3'
miRNA:   3'- cCG-UGUUGUCGAgGUUCGgGCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 35896 0.72 0.622338
Target:  5'- cGGCGCGuugcCAGCUCCAgcggguuguacAGCCCGAcuuuuccagaGUGa -3'
miRNA:   3'- -CCGUGUu---GUCGAGGU-----------UCGGGCU----------CACg -5'
6787 5' -54.8 NC_001875.2 + 95196 0.72 0.622338
Target:  5'- cGCACGacGCGGCcaucUUCAAGCUCGuGUGCc -3'
miRNA:   3'- cCGUGU--UGUCG----AGGUUCGGGCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 68586 0.72 0.643225
Target:  5'- uGGCGCcGCuGGCcgCCGAGCCCGAc-GCg -3'
miRNA:   3'- -CCGUGuUG-UCGa-GGUUCGGGCUcaCG- -5'
6787 5' -54.8 NC_001875.2 + 70196 0.72 0.643225
Target:  5'- gGGCgGCGACGGCgaCCAcugggcGCCCGAG-GCg -3'
miRNA:   3'- -CCG-UGUUGUCGa-GGUu-----CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 54800 0.71 0.651573
Target:  5'- cGGCACuagcaccgcgacGCGGCUgCCGAGCCCGAa--- -3'
miRNA:   3'- -CCGUGu-----------UGUCGA-GGUUCGGGCUcacg -5'
6787 5' -54.8 NC_001875.2 + 77630 0.71 0.653659
Target:  5'- cGGCgGCAACGGCU-CGGGUCUG-GUGCc -3'
miRNA:   3'- -CCG-UGUUGUCGAgGUUCGGGCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 77441 0.71 0.653659
Target:  5'- cGGCAUggacgAGCcGUUCCAcaacuggcGGCCCGAcGUGCu -3'
miRNA:   3'- -CCGUG-----UUGuCGAGGU--------UCGGGCU-CACG- -5'
6787 5' -54.8 NC_001875.2 + 39274 0.71 0.695124
Target:  5'- cGCGgGGCGGCUUCu-GCCCGccgacaccaAGUGCg -3'
miRNA:   3'- cCGUgUUGUCGAGGuuCGGGC---------UCACG- -5'
6787 5' -54.8 NC_001875.2 + 119678 0.71 0.695124
Target:  5'- cGCACAGCGGCUUCAgccgaaAGCgCUGGuUGCg -3'
miRNA:   3'- cCGUGUUGUCGAGGU------UCG-GGCUcACG- -5'
6787 5' -54.8 NC_001875.2 + 47498 0.7 0.705377
Target:  5'- cGGCGCAGCcGCUCCGccacucgccGCuCCGGGUaccGCa -3'
miRNA:   3'- -CCGUGUUGuCGAGGUu--------CG-GGCUCA---CG- -5'
6787 5' -54.8 NC_001875.2 + 12350 0.7 0.705377
Target:  5'- uGUuuGACGGCUucgCCAAGCCCGAcgacgaggGUGCc -3'
miRNA:   3'- cCGugUUGUCGA---GGUUCGGGCU--------CACG- -5'
6787 5' -54.8 NC_001875.2 + 58790 0.7 0.715566
Target:  5'- cGGCGCAaaACAGCgCCGaguuGGCCC-AGcUGCa -3'
miRNA:   3'- -CCGUGU--UGUCGaGGU----UCGGGcUC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.