miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 5' -54.8 NC_001875.2 + 1013 0.68 0.846012
Target:  5'- gGGCcCGuucuuGCAGCgcguggCgGGGCCCGAG-GCg -3'
miRNA:   3'- -CCGuGU-----UGUCGa-----GgUUCGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 78276 0.7 0.745647
Target:  5'- aGCGuCuuguACGGCaCCAAGCCCGuuUGCg -3'
miRNA:   3'- cCGU-Gu---UGUCGaGGUUCGGGCucACG- -5'
6787 5' -54.8 NC_001875.2 + 12131 0.7 0.745647
Target:  5'- uGCGCGGC-GCggaaGAGCCCGAGcGCa -3'
miRNA:   3'- cCGUGUUGuCGagg-UUCGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 48838 0.69 0.774795
Target:  5'- cGGCGCc---GCUUCAAGCCCGccgGCg -3'
miRNA:   3'- -CCGUGuuguCGAGGUUCGGGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 110384 0.69 0.784259
Target:  5'- uGGC-CGACGGCUCgugcguGCCCGuggagaucaAGUGCc -3'
miRNA:   3'- -CCGuGUUGUCGAGguu---CGGGC---------UCACG- -5'
6787 5' -54.8 NC_001875.2 + 88002 0.68 0.829259
Target:  5'- cGCGCAGCAGCcaagccagCCAAcGCCCGc--GCa -3'
miRNA:   3'- cCGUGUUGUCGa-------GGUU-CGGGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 88041 0.68 0.829259
Target:  5'- cGCGCAGCAGCcaagccagCCAAcGCCCGcGUa- -3'
miRNA:   3'- cCGUGUUGUCGa-------GGUU-CGGGCuCAcg -5'
6787 5' -54.8 NC_001875.2 + 122717 0.68 0.836894
Target:  5'- uGGCGCGcgaguccACGGCgUCCGAGUUCGuG-GCg -3'
miRNA:   3'- -CCGUGU-------UGUCG-AGGUUCGGGCuCaCG- -5'
6787 5' -54.8 NC_001875.2 + 90710 0.68 0.837732
Target:  5'- cGGCGCGGCcGCcggUCAAGCgCGAcacgacGUGCg -3'
miRNA:   3'- -CCGUGUUGuCGa--GGUUCGgGCU------CACG- -5'
6787 5' -54.8 NC_001875.2 + 95520 0.7 0.73571
Target:  5'- cGCGCAACAGC-CCcAGCgCGGGaucGCa -3'
miRNA:   3'- cCGUGUUGUCGaGGuUCGgGCUCa--CG- -5'
6787 5' -54.8 NC_001875.2 + 22843 0.7 0.715566
Target:  5'- cGGCACGACGuacGCgUCC-AGCCUGGacaccGUGCu -3'
miRNA:   3'- -CCGUGUUGU---CG-AGGuUCGGGCU-----CACG- -5'
6787 5' -54.8 NC_001875.2 + 58790 0.7 0.715566
Target:  5'- cGGCGCAaaACAGCgCCGaguuGGCCC-AGcUGCa -3'
miRNA:   3'- -CCGUGU--UGUCGaGGU----UCGGGcUC-ACG- -5'
6787 5' -54.8 NC_001875.2 + 122804 0.74 0.489937
Target:  5'- cGGCGCGgccgGCGGCUCCAAacgcaaggcGUCCGAG-GUg -3'
miRNA:   3'- -CCGUGU----UGUCGAGGUU---------CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 107807 0.74 0.529606
Target:  5'- cGUugAACAGCcacgcgaccgCCGAGCCCGcgcccGGUGCg -3'
miRNA:   3'- cCGugUUGUCGa---------GGUUCGGGC-----UCACG- -5'
6787 5' -54.8 NC_001875.2 + 49466 0.73 0.580721
Target:  5'- cGGCGCcgUGGUUCCGcgcgcGCCCGAGUuuGCa -3'
miRNA:   3'- -CCGUGuuGUCGAGGUu----CGGGCUCA--CG- -5'
6787 5' -54.8 NC_001875.2 + 35896 0.72 0.622338
Target:  5'- cGGCGCGuugcCAGCUCCAgcggguuguacAGCCCGAcuuuuccagaGUGa -3'
miRNA:   3'- -CCGUGUu---GUCGAGGU-----------UCGGGCU----------CACg -5'
6787 5' -54.8 NC_001875.2 + 70196 0.72 0.643225
Target:  5'- gGGCgGCGACGGCgaCCAcugggcGCCCGAG-GCg -3'
miRNA:   3'- -CCG-UGUUGUCGa-GGUu-----CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 68586 0.72 0.643225
Target:  5'- uGGCGCcGCuGGCcgCCGAGCCCGAc-GCg -3'
miRNA:   3'- -CCGUGuUG-UCGa-GGUUCGGGCUcaCG- -5'
6787 5' -54.8 NC_001875.2 + 39274 0.71 0.695124
Target:  5'- cGCGgGGCGGCUUCu-GCCCGccgacaccaAGUGCg -3'
miRNA:   3'- cCGUgUUGUCGAGGuuCGGGC---------UCACG- -5'
6787 5' -54.8 NC_001875.2 + 12350 0.7 0.705377
Target:  5'- uGUuuGACGGCUucgCCAAGCCCGAcgacgaggGUGCc -3'
miRNA:   3'- cCGugUUGUCGA---GGUUCGGGCU--------CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.