miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 5' -54.8 NC_001875.2 + 476 0.7 0.755479
Target:  5'- -aCACGAagAGUUCCAAGCCaCGuuGUGCg -3'
miRNA:   3'- ccGUGUUg-UCGAGGUUCGG-GCu-CACG- -5'
6787 5' -54.8 NC_001875.2 + 1013 0.68 0.846012
Target:  5'- gGGCcCGuucuuGCAGCgcguggCgGGGCCCGAG-GCg -3'
miRNA:   3'- -CCGuGU-----UGUCGa-----GgUUCGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 2758 0.66 0.904434
Target:  5'- aGGCGcCAGCGGCUgCu--CCCGGGcagGCu -3'
miRNA:   3'- -CCGU-GUUGUCGAgGuucGGGCUCa--CG- -5'
6787 5' -54.8 NC_001875.2 + 3065 0.7 0.755479
Target:  5'- cGCGCAGCGGCgcgCCGGggucGCCCacGGcGUGCa -3'
miRNA:   3'- cCGUGUUGUCGa--GGUU----CGGG--CU-CACG- -5'
6787 5' -54.8 NC_001875.2 + 3868 0.7 0.745647
Target:  5'- uGGCACGGCAGCaccgcgccgCCAAGCUgGGcagGCu -3'
miRNA:   3'- -CCGUGUUGUCGa--------GGUUCGGgCUca-CG- -5'
6787 5' -54.8 NC_001875.2 + 4527 0.66 0.927944
Target:  5'- cGGCGCAccgccggcuGCGGUUCCugcGGUuuGGGgGCc -3'
miRNA:   3'- -CCGUGU---------UGUCGAGGu--UCGggCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 7254 0.67 0.89121
Target:  5'- cGCGCuGCAGCggCCuGGCgCGGGUcGCc -3'
miRNA:   3'- cCGUGuUGUCGa-GGuUCGgGCUCA-CG- -5'
6787 5' -54.8 NC_001875.2 + 9777 0.66 0.904434
Target:  5'- aGCGCAcGCGGCacaUCCGGGCaCUGcgcGUGCa -3'
miRNA:   3'- cCGUGU-UGUCG---AGGUUCG-GGCu--CACG- -5'
6787 5' -54.8 NC_001875.2 + 10440 0.68 0.854089
Target:  5'- uGGCGCAGCAGCUuuGacgcGGCgCGGcgGCg -3'
miRNA:   3'- -CCGUGUUGUCGAggU----UCGgGCUcaCG- -5'
6787 5' -54.8 NC_001875.2 + 10456 0.67 0.890524
Target:  5'- gGGCACGcaGGUggccgagUCCAacucaaacucguGGCCCGGGUcGCa -3'
miRNA:   3'- -CCGUGUugUCG-------AGGU------------UCGGGCUCA-CG- -5'
6787 5' -54.8 NC_001875.2 + 12131 0.7 0.745647
Target:  5'- uGCGCGGC-GCggaaGAGCCCGAGcGCa -3'
miRNA:   3'- cCGUGUUGuCGagg-UUCGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 12350 0.7 0.705377
Target:  5'- uGUuuGACGGCUucgCCAAGCCCGAcgacgaggGUGCc -3'
miRNA:   3'- cCGugUUGUCGA---GGUUCGGGCU--------CACG- -5'
6787 5' -54.8 NC_001875.2 + 12969 0.66 0.916685
Target:  5'- cGGCggGCGugGGCUCCGcGCCguGGUGg -3'
miRNA:   3'- -CCG--UGUugUCGAGGUuCGGgcUCACg -5'
6787 5' -54.8 NC_001875.2 + 15375 0.67 0.872607
Target:  5'- cGGU-CAGCAGCUCCAGcgagcuuaugaaagcGCUCGAcaGCg -3'
miRNA:   3'- -CCGuGUUGUCGAGGUU---------------CGGGCUcaCG- -5'
6787 5' -54.8 NC_001875.2 + 19918 0.69 0.784259
Target:  5'- cGUACGGCAGCUgCAccGGCCCGuacacGGaGCg -3'
miRNA:   3'- cCGUGUUGUCGAgGU--UCGGGC-----UCaCG- -5'
6787 5' -54.8 NC_001875.2 + 19954 0.67 0.877038
Target:  5'- cGGCGCGACGGUccggCCGGcGCCUcgccguugcuGAcGUGCg -3'
miRNA:   3'- -CCGUGUUGUCGa---GGUU-CGGG----------CU-CACG- -5'
6787 5' -54.8 NC_001875.2 + 22563 0.66 0.916685
Target:  5'- aGCGCu-CGGUUUUAAcGCCCGGGcGCg -3'
miRNA:   3'- cCGUGuuGUCGAGGUU-CGGGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 22843 0.7 0.715566
Target:  5'- cGGCACGACGuacGCgUCC-AGCCUGGacaccGUGCu -3'
miRNA:   3'- -CCGUGUUGU---CG-AGGuUCGGGCU-----CACG- -5'
6787 5' -54.8 NC_001875.2 + 23171 0.72 0.611903
Target:  5'- gGGCACGGCGGCUgCGGGCacggCCGuugGCg -3'
miRNA:   3'- -CCGUGUUGUCGAgGUUCG----GGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 25912 0.66 0.916685
Target:  5'- cGGCAa---AGCggCCAAuGCCCGAGUu- -3'
miRNA:   3'- -CCGUguugUCGa-GGUU-CGGGCUCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.