miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 3' -49.1 NC_001875.2 + 67054 1.13 0.005758
Target:  5'- aCAACAUCAAAACCAAGCCGCUGGAGCu -3'
miRNA:   3'- -GUUGUAGUUUUGGUUCGGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 10558 0.77 0.659668
Target:  5'- -cGCAUUcAAGCCAaaguAGCCGCgGGGGCa -3'
miRNA:   3'- guUGUAGuUUUGGU----UCGGCGaCCUCG- -5'
6797 3' -49.1 NC_001875.2 + 70158 0.77 0.681402
Target:  5'- ----uUCAAGAUCGGcCCGCUGGAGCa -3'
miRNA:   3'- guuguAGUUUUGGUUcGGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 8054 0.76 0.724226
Target:  5'- ---uGUgAAAGCCAAGCUGUaaUGGAGCg -3'
miRNA:   3'- guugUAgUUUUGGUUCGGCG--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 49294 0.76 0.74203
Target:  5'- aCAACGUCAuccuggaccuGAGCCAccugcaguugcacgGGCCGCccgaGGAGCg -3'
miRNA:   3'- -GUUGUAGU----------UUUGGU--------------UCGGCGa---CCUCG- -5'
6797 3' -49.1 NC_001875.2 + 47183 0.75 0.765603
Target:  5'- -uGCA-CGAAugCAAggcGCUGCUGGAGCa -3'
miRNA:   3'- guUGUaGUUUugGUU---CGGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 124577 0.75 0.765603
Target:  5'- -cACGUCGGcgacccgcGCCAGGCCGCUGcAGCg -3'
miRNA:   3'- guUGUAGUUu-------UGGUUCGGCGACcUCG- -5'
6797 3' -49.1 NC_001875.2 + 57844 0.75 0.765603
Target:  5'- gAGCG-CGcGAAUCAAGgCGCUGGAGCg -3'
miRNA:   3'- gUUGUaGU-UUUGGUUCgGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 127386 0.73 0.858104
Target:  5'- aCGGCGcUCAGAGCCuGGCCaaaguGCUGGcGGCg -3'
miRNA:   3'- -GUUGU-AGUUUUGGuUCGG-----CGACC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 28915 0.72 0.896212
Target:  5'- -cACAaCAAGACCGuGGCCGCguauuucgagagUGGGGCg -3'
miRNA:   3'- guUGUaGUUUUGGU-UCGGCG------------ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 38719 0.72 0.903066
Target:  5'- uGACGUUGAucAUCAcGuuGCUGGAGCg -3'
miRNA:   3'- gUUGUAGUUu-UGGUuCggCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 69241 0.72 0.915972
Target:  5'- gCGGCGUCGAAcggcgcGCUggGCCGCggcucGAGCc -3'
miRNA:   3'- -GUUGUAGUUU------UGGuuCGGCGac---CUCG- -5'
6797 3' -49.1 NC_001875.2 + 93937 0.71 0.931675
Target:  5'- aCGACG-CGGuGCCAgugccgcgccagcaAGCCGCUGGcGCg -3'
miRNA:   3'- -GUUGUaGUUuUGGU--------------UCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 78274 0.71 0.931675
Target:  5'- aCAGCGUCuuguacggcACCAAGCCcguuugcggcucgcGCUGGuAGCg -3'
miRNA:   3'- -GUUGUAGuuu------UGGUUCGG--------------CGACC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 95930 0.71 0.933297
Target:  5'- ---aGUCGGAGCUGuacaacCCGCUGGAGCu -3'
miRNA:   3'- guugUAGUUUUGGUuc----GGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 110260 0.71 0.933297
Target:  5'- gAACGgcuGGGCCGgcuGGCCGC-GGAGCg -3'
miRNA:   3'- gUUGUaguUUUGGU---UCGGCGaCCUCG- -5'
6797 3' -49.1 NC_001875.2 + 113092 0.71 0.938527
Target:  5'- -cGCGUCAGcGCCuuAGCCGCcgugGuGAGCg -3'
miRNA:   3'- guUGUAGUUuUGGu-UCGGCGa---C-CUCG- -5'
6797 3' -49.1 NC_001875.2 + 109385 0.71 0.938527
Target:  5'- gGACAUCAAGcucaaccaccgcGCCAcGcCCGaaaUGGAGCa -3'
miRNA:   3'- gUUGUAGUUU------------UGGUuC-GGCg--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 7297 0.71 0.943486
Target:  5'- gGACAUCAGAGCCGA-CgGUUGGuGGUa -3'
miRNA:   3'- gUUGUAGUUUUGGUUcGgCGACC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 65749 0.71 0.943486
Target:  5'- gGGCAUCAcgagcgaccuGAGCC-GGCgGCUGG-GCg -3'
miRNA:   3'- gUUGUAGU----------UUUGGuUCGgCGACCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.