miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 3' -49.1 NC_001875.2 + 116452 0.68 0.985417
Target:  5'- ---uGUCGAGcGCUuucauAAGCuCGCUGGAGCu -3'
miRNA:   3'- guugUAGUUU-UGG-----UUCG-GCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 42897 0.7 0.96433
Target:  5'- uCAACGUCGAGGCUGugcGCCGCaugccgUGG-GCg -3'
miRNA:   3'- -GUUGUAGUUUUGGUu--CGGCG------ACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 80648 0.7 0.96433
Target:  5'- gCGGCGcCAGAACCGcGCCGUcgUGG-GCa -3'
miRNA:   3'- -GUUGUaGUUUUGGUuCGGCG--ACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 104549 0.69 0.970915
Target:  5'- aAACAUaaucAACCAuuaauAGUgGCUGGGGCg -3'
miRNA:   3'- gUUGUAguu-UUGGU-----UCGgCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 120455 0.69 0.973859
Target:  5'- cCAugAUCAAuacguuggaaauGACCcAGCCccuGCUGGAGg -3'
miRNA:   3'- -GUugUAGUU------------UUGGuUCGG---CGACCUCg -5'
6797 3' -49.1 NC_001875.2 + 108246 0.68 0.983496
Target:  5'- -cGCGUCAa---CGGGCUGCUGGccaAGCa -3'
miRNA:   3'- guUGUAGUuuugGUUCGGCGACC---UCG- -5'
6797 3' -49.1 NC_001875.2 + 108958 0.68 0.983496
Target:  5'- cCAACugCAAGAauuggccgaCAAGCUGCUGGAcGCa -3'
miRNA:   3'- -GUUGuaGUUUUg--------GUUCGGCGACCU-CG- -5'
6797 3' -49.1 NC_001875.2 + 112681 0.68 0.983496
Target:  5'- aAAC-UCGAGACguguguacagCGAGCUGCUGGccAGCg -3'
miRNA:   3'- gUUGuAGUUUUG----------GUUCGGCGACC--UCG- -5'
6797 3' -49.1 NC_001875.2 + 49924 0.68 0.984286
Target:  5'- --uCGUCGGAGCCGcGCgCGCUaaucagcuggucgucGGAGCu -3'
miRNA:   3'- guuGUAGUUUUGGUuCG-GCGA---------------CCUCG- -5'
6797 3' -49.1 NC_001875.2 + 113498 0.7 0.956767
Target:  5'- uGGCGUCcauGCCGAGCUGCUGcaaagucGGCg -3'
miRNA:   3'- gUUGUAGuuuUGGUUCGGCGACc------UCG- -5'
6797 3' -49.1 NC_001875.2 + 49503 0.7 0.956362
Target:  5'- -cACAUCAGuuucaacucggcgGACCGcgaccAGUCGCUGGuGCu -3'
miRNA:   3'- guUGUAGUU-------------UUGGU-----UCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 54207 0.7 0.955545
Target:  5'- uCGGCAcCAGAcCCGAGCCGUUGccgccgauguacucGAGCu -3'
miRNA:   3'- -GUUGUaGUUUuGGUUCGGCGAC--------------CUCG- -5'
6797 3' -49.1 NC_001875.2 + 49294 0.76 0.74203
Target:  5'- aCAACGUCAuccuggaccuGAGCCAccugcaguugcacgGGCCGCccgaGGAGCg -3'
miRNA:   3'- -GUUGUAGU----------UUUGGU--------------UCGGCGa---CCUCG- -5'
6797 3' -49.1 NC_001875.2 + 47183 0.75 0.765603
Target:  5'- -uGCA-CGAAugCAAggcGCUGCUGGAGCa -3'
miRNA:   3'- guUGUaGUUUugGUU---CGGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 57844 0.75 0.765603
Target:  5'- gAGCG-CGcGAAUCAAGgCGCUGGAGCg -3'
miRNA:   3'- gUUGUaGU-UUUGGUUCgGCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 78274 0.71 0.931675
Target:  5'- aCAGCGUCuuguacggcACCAAGCCcguuugcggcucgcGCUGGuAGCg -3'
miRNA:   3'- -GUUGUAGuuu------UGGUUCGG--------------CGACC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 110260 0.71 0.933297
Target:  5'- gAACGgcuGGGCCGgcuGGCCGC-GGAGCg -3'
miRNA:   3'- gUUGUaguUUUGGU---UCGGCGaCCUCG- -5'
6797 3' -49.1 NC_001875.2 + 109385 0.71 0.938527
Target:  5'- gGACAUCAAGcucaaccaccgcGCCAcGcCCGaaaUGGAGCa -3'
miRNA:   3'- gUUGUAGUUU------------UGGUuC-GGCg--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 113092 0.71 0.938527
Target:  5'- -cGCGUCAGcGCCuuAGCCGCcgugGuGAGCg -3'
miRNA:   3'- guUGUAGUUuUGGu-UCGGCGa---C-CUCG- -5'
6797 3' -49.1 NC_001875.2 + 7297 0.71 0.943486
Target:  5'- gGACAUCAGAGCCGA-CgGUUGGuGGUa -3'
miRNA:   3'- gUUGUAGUUUUGGUUcGgCGACC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.