miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 3' -49.1 NC_001875.2 + 6790 0.67 0.992591
Target:  5'- gGGCAUCAgcgacccgcAGAUCGGGUCGCUGaaccAGCu -3'
miRNA:   3'- gUUGUAGU---------UUUGGUUCGGCGACc---UCG- -5'
6797 3' -49.1 NC_001875.2 + 7297 0.71 0.943486
Target:  5'- gGACAUCAGAGCCGA-CgGUUGGuGGUa -3'
miRNA:   3'- gUUGUAGUUUUGGUUcGgCGACC-UCG- -5'
6797 3' -49.1 NC_001875.2 + 8054 0.76 0.724226
Target:  5'- ---uGUgAAAGCCAAGCUGUaaUGGAGCg -3'
miRNA:   3'- guugUAgUUUUGGUUCGGCG--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 10558 0.77 0.659668
Target:  5'- -cGCAUUcAAGCCAaaguAGCCGCgGGGGCa -3'
miRNA:   3'- guUGUAGuUUUGGU----UCGGCGaCCUCG- -5'
6797 3' -49.1 NC_001875.2 + 17264 0.66 0.99531
Target:  5'- -cGCGUUu--GCCGAcgcgcacaauccGCCGCacUGGAGCg -3'
miRNA:   3'- guUGUAGuuuUGGUU------------CGGCG--ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 18667 0.66 0.99601
Target:  5'- -cGCGUCAcGGugC-GGCUGCUGG-GCg -3'
miRNA:   3'- guUGUAGU-UUugGuUCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 19448 0.66 0.997155
Target:  5'- gAACGUCGgggaucucgggGAGCuCAGGCucgggCGCUGGuGCu -3'
miRNA:   3'- gUUGUAGU-----------UUUG-GUUCG-----GCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 19849 0.68 0.983496
Target:  5'- aCAGCGcgCAAGACUcGGCCGCgucgcGGcGCg -3'
miRNA:   3'- -GUUGUa-GUUUUGGuUCGGCGa----CCuCG- -5'
6797 3' -49.1 NC_001875.2 + 22759 0.67 0.992591
Target:  5'- cCAGCA-CAucACCGgcacacAGCgGCUGGuGCa -3'
miRNA:   3'- -GUUGUaGUuuUGGU------UCGgCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 23084 0.69 0.979086
Target:  5'- aGGCuguUCAcGACCAGGUCGCucUGGcGCg -3'
miRNA:   3'- gUUGu--AGUuUUGGUUCGGCG--ACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 26917 0.7 0.948177
Target:  5'- aCAGCAUUu--ACaaggaGGGCCGCUGGGuuGCa -3'
miRNA:   3'- -GUUGUAGuuuUGg----UUCGGCGACCU--CG- -5'
6797 3' -49.1 NC_001875.2 + 27185 0.67 0.99361
Target:  5'- gAGC-UCAAcGCCAcGCUcuacucauuuauGCUGGGGCa -3'
miRNA:   3'- gUUGuAGUUuUGGUuCGG------------CGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 28915 0.72 0.896212
Target:  5'- -cACAaCAAGACCGuGGCCGCguauuucgagagUGGGGCg -3'
miRNA:   3'- guUGUaGUUUUGGU-UCGGCG------------ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 36306 0.7 0.956767
Target:  5'- uCAGCgAUCGAAugCGAuCCcgcGCUGGGGCu -3'
miRNA:   3'- -GUUG-UAGUUUugGUUcGG---CGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 38680 0.67 0.990168
Target:  5'- --cCAUCAAGugC-GGCgGCgUGGGGCu -3'
miRNA:   3'- guuGUAGUUUugGuUCGgCG-ACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 38719 0.72 0.903066
Target:  5'- uGACGUUGAucAUCAcGuuGCUGGAGCg -3'
miRNA:   3'- gUUGUAGUUu-UGGUuCggCGACCUCG- -5'
6797 3' -49.1 NC_001875.2 + 39851 0.68 0.987163
Target:  5'- aUAACAgCAAAAUUAGGaCCGCUGuuGCg -3'
miRNA:   3'- -GUUGUaGUUUUGGUUC-GGCGACcuCG- -5'
6797 3' -49.1 NC_001875.2 + 40437 0.67 0.99361
Target:  5'- --cCAUCAauugcGAGCU--GCCGCUGGcGCa -3'
miRNA:   3'- guuGUAGU-----UUUGGuuCGGCGACCuCG- -5'
6797 3' -49.1 NC_001875.2 + 42434 0.66 0.996623
Target:  5'- gCAGCAcgCAAAcGCCugcgucagcGGCCGCUGcGGCg -3'
miRNA:   3'- -GUUGUa-GUUU-UGGu--------UCGGCGACcUCG- -5'
6797 3' -49.1 NC_001875.2 + 42897 0.7 0.96433
Target:  5'- uCAACGUCGAGGCUGugcGCCGCaugccgUGG-GCg -3'
miRNA:   3'- -GUUGUAGUUUUGGUu--CGGCG------ACCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.