miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 5' -57 NC_001875.2 + 67088 1.08 0.002308
Target:  5'- cGAGAUCUACGCGCGCAACCCCACCGUg -3'
miRNA:   3'- -CUCUAGAUGCGCGCGUUGGGGUGGCA- -5'
6797 5' -57 NC_001875.2 + 128733 0.75 0.366567
Target:  5'- cAGGUCUGCGCGCGagccgcGCCCCggcgcgugcacGCCGUg -3'
miRNA:   3'- cUCUAGAUGCGCGCgu----UGGGG-----------UGGCA- -5'
6797 5' -57 NC_001875.2 + 21836 0.74 0.391384
Target:  5'- -cGAgCUGCGCGCGCGucaACgCCACCGa -3'
miRNA:   3'- cuCUaGAUGCGCGCGU---UGgGGUGGCa -5'
6797 5' -57 NC_001875.2 + 64769 0.73 0.435099
Target:  5'- uAGAUCU-CGCGCGcCAGCUCCAgCGg -3'
miRNA:   3'- cUCUAGAuGCGCGC-GUUGGGGUgGCa -5'
6797 5' -57 NC_001875.2 + 126742 0.73 0.444176
Target:  5'- --cGUCguuaGCGCGCGCAGCCCCAUUa- -3'
miRNA:   3'- cucUAGa---UGCGCGCGUUGGGGUGGca -5'
6797 5' -57 NC_001875.2 + 81479 0.73 0.453359
Target:  5'- -cGGUCagugGCGCGCGCGGCCCgaCGCCa- -3'
miRNA:   3'- cuCUAGa---UGCGCGCGUUGGG--GUGGca -5'
6797 5' -57 NC_001875.2 + 75371 0.72 0.499766
Target:  5'- uGGcgCUgaccaacACGCGCGCgGACCCCGCCa- -3'
miRNA:   3'- cUCuaGA-------UGCGCGCG-UUGGGGUGGca -5'
6797 5' -57 NC_001875.2 + 37106 0.71 0.530187
Target:  5'- uGGGUgUGCGgGCGCGGCgCCgCGCCGg -3'
miRNA:   3'- cUCUAgAUGCgCGCGUUG-GG-GUGGCa -5'
6797 5' -57 NC_001875.2 + 47623 0.71 0.540147
Target:  5'- uGGAcgaGCGCGCGCGGCCCUacuACCGg -3'
miRNA:   3'- cUCUagaUGCGCGCGUUGGGG---UGGCa -5'
6797 5' -57 NC_001875.2 + 43417 0.71 0.570377
Target:  5'- cAGAUUUGCGCGUGCGugCCguCCu- -3'
miRNA:   3'- cUCUAGAUGCGCGCGUugGGguGGca -5'
6797 5' -57 NC_001875.2 + 18277 0.71 0.570377
Target:  5'- uGGcgCgcCGUGCGCGACCgCGCCGUu -3'
miRNA:   3'- cUCuaGauGCGCGCGUUGGgGUGGCA- -5'
6797 5' -57 NC_001875.2 + 18158 0.7 0.590761
Target:  5'- -uGGUgcgGCGCGCGCGACgCCGCCa- -3'
miRNA:   3'- cuCUAga-UGCGCGCGUUGgGGUGGca -5'
6797 5' -57 NC_001875.2 + 10996 0.7 0.590761
Target:  5'- aAGcgCUGCagGCGCGCGugCCCAUgGUg -3'
miRNA:   3'- cUCuaGAUG--CGCGCGUugGGGUGgCA- -5'
6797 5' -57 NC_001875.2 + 91454 0.7 0.590761
Target:  5'- cGGcgCgUGgGCGCGCAugUCCACCGa -3'
miRNA:   3'- cUCuaG-AUgCGCGCGUugGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 104123 0.7 0.601002
Target:  5'- aGGAUCUACuGCGCGCcguggGGCCCauucCCGUg -3'
miRNA:   3'- cUCUAGAUG-CGCGCG-----UUGGGgu--GGCA- -5'
6797 5' -57 NC_001875.2 + 18293 0.7 0.642123
Target:  5'- aAGGccgCUuCGCGCGCuuauuGGCCCCGCCGc -3'
miRNA:   3'- cUCUa--GAuGCGCGCG-----UUGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 81916 0.69 0.652404
Target:  5'- -uGAUUaGCGCGCGCGGCUCCGaCGa -3'
miRNA:   3'- cuCUAGaUGCGCGCGUUGGGGUgGCa -5'
6797 5' -57 NC_001875.2 + 71946 0.69 0.652404
Target:  5'- -cGcgCUcCGCGCGCAGCCUguCGCCGc -3'
miRNA:   3'- cuCuaGAuGCGCGCGUUGGG--GUGGCa -5'
6797 5' -57 NC_001875.2 + 119371 0.68 0.703388
Target:  5'- --cAUCUACGaCGCGCAGuuuCCCC-CCGa -3'
miRNA:   3'- cucUAGAUGC-GCGCGUU---GGGGuGGCa -5'
6797 5' -57 NC_001875.2 + 63704 0.68 0.703388
Target:  5'- cGAGGU--GCGCGUGauuGCCUCGCCGg -3'
miRNA:   3'- -CUCUAgaUGCGCGCgu-UGGGGUGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.