miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 5' -57 NC_001875.2 + 119051 0.66 0.817326
Target:  5'- -uGGUCcgGCGUGCGCAugugcgcggcGCCCCgGCUGg -3'
miRNA:   3'- cuCUAGa-UGCGCGCGU----------UGGGG-UGGCa -5'
6797 5' -57 NC_001875.2 + 98792 0.68 0.733321
Target:  5'- cGGAacgCUaucGCGCgGCGCGGCgCCCGCCGc -3'
miRNA:   3'- cUCUa--GA---UGCG-CGCGUUG-GGGUGGCa -5'
6797 5' -57 NC_001875.2 + 82173 0.68 0.743134
Target:  5'- cGGGcggUACGUGCGCAACCgCCGCgGg -3'
miRNA:   3'- -CUCuagAUGCGCGCGUUGG-GGUGgCa -5'
6797 5' -57 NC_001875.2 + 109999 0.67 0.770058
Target:  5'- -cGGUCgguggcguugacGCGCGCGCAGCUCgACCa- -3'
miRNA:   3'- cuCUAGa-----------UGCGCGCGUUGGGgUGGca -5'
6797 5' -57 NC_001875.2 + 89542 0.67 0.781311
Target:  5'- cGGGAUCgucuaUACGCacGCGCAGCC-UGCCGUu -3'
miRNA:   3'- -CUCUAG-----AUGCG--CGCGUUGGgGUGGCA- -5'
6797 5' -57 NC_001875.2 + 74143 0.67 0.808556
Target:  5'- gGAGuUCga-GgGCGCGGCgCCCGCCGc -3'
miRNA:   3'- -CUCuAGaugCgCGCGUUG-GGGUGGCa -5'
6797 5' -57 NC_001875.2 + 18019 0.66 0.817326
Target:  5'- gGGGcgCUACGCGCGCGACauugaCGUg -3'
miRNA:   3'- -CUCuaGAUGCGCGCGUUGgggugGCA- -5'
6797 5' -57 NC_001875.2 + 31919 0.66 0.817326
Target:  5'- -cGcgCUGCaccGCGCGCGGgCCCGCuCGUu -3'
miRNA:   3'- cuCuaGAUG---CGCGCGUUgGGGUG-GCA- -5'
6797 5' -57 NC_001875.2 + 87193 0.66 0.817326
Target:  5'- cGAGAUCU-UGaCGCGCGACCgCGCacaGg -3'
miRNA:   3'- -CUCUAGAuGC-GCGCGUUGGgGUGg--Ca -5'
6797 5' -57 NC_001875.2 + 119371 0.68 0.703388
Target:  5'- --cAUCUACGaCGCGCAGuuuCCCC-CCGa -3'
miRNA:   3'- cucUAGAUGC-GCGCGUU---GGGGuGGCa -5'
6797 5' -57 NC_001875.2 + 71946 0.69 0.652404
Target:  5'- -cGcgCUcCGCGCGCAGCCUguCGCCGc -3'
miRNA:   3'- cuCuaGAuGCGCGCGUUGGG--GUGGCa -5'
6797 5' -57 NC_001875.2 + 18293 0.7 0.642123
Target:  5'- aAGGccgCUuCGCGCGCuuauuGGCCCCGCCGc -3'
miRNA:   3'- cUCUa--GAuGCGCGCG-----UUGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 64769 0.73 0.435099
Target:  5'- uAGAUCU-CGCGCGcCAGCUCCAgCGg -3'
miRNA:   3'- cUCUAGAuGCGCGC-GUUGGGGUgGCa -5'
6797 5' -57 NC_001875.2 + 37106 0.71 0.530187
Target:  5'- uGGGUgUGCGgGCGCGGCgCCgCGCCGg -3'
miRNA:   3'- cUCUAgAUGCgCGCGUUG-GG-GUGGCa -5'
6797 5' -57 NC_001875.2 + 47623 0.71 0.540147
Target:  5'- uGGAcgaGCGCGCGCGGCCCUacuACCGg -3'
miRNA:   3'- cUCUagaUGCGCGCGUUGGGG---UGGCa -5'
6797 5' -57 NC_001875.2 + 43417 0.71 0.570377
Target:  5'- cAGAUUUGCGCGUGCGugCCguCCu- -3'
miRNA:   3'- cUCUAGAUGCGCGCGUugGGguGGca -5'
6797 5' -57 NC_001875.2 + 18158 0.7 0.590761
Target:  5'- -uGGUgcgGCGCGCGCGACgCCGCCa- -3'
miRNA:   3'- cuCUAga-UGCGCGCGUUGgGGUGGca -5'
6797 5' -57 NC_001875.2 + 91454 0.7 0.590761
Target:  5'- cGGcgCgUGgGCGCGCAugUCCACCGa -3'
miRNA:   3'- cUCuaG-AUgCGCGCGUugGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 10996 0.7 0.590761
Target:  5'- aAGcgCUGCagGCGCGCGugCCCAUgGUg -3'
miRNA:   3'- cUCuaGAUG--CGCGCGUugGGGUGgCA- -5'
6797 5' -57 NC_001875.2 + 104123 0.7 0.601002
Target:  5'- aGGAUCUACuGCGCGCcguggGGCCCauucCCGUg -3'
miRNA:   3'- cUCUAGAUG-CGCGCG-----UUGGGgu--GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.