miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6797 5' -57 NC_001875.2 + 5512 0.66 0.834348
Target:  5'- cGGcgC-ACGCGCGCAguuuacGCCggCCGCCGUu -3'
miRNA:   3'- cUCuaGaUGCGCGCGU------UGG--GGUGGCA- -5'
6797 5' -57 NC_001875.2 + 7280 0.67 0.762456
Target:  5'- -cGGUgUGC-CGCcaaaGCGACCCCGCCGc -3'
miRNA:   3'- cuCUAgAUGcGCG----CGUUGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 10996 0.7 0.590761
Target:  5'- aAGcgCUGCagGCGCGCGugCCCAUgGUg -3'
miRNA:   3'- cUCuaGAUG--CGCGCGUugGGGUGgCA- -5'
6797 5' -57 NC_001875.2 + 18019 0.66 0.817326
Target:  5'- gGGGcgCUACGCGCGCGACauugaCGUg -3'
miRNA:   3'- -CUCuaGAUGCGCGCGUUGgggugGCA- -5'
6797 5' -57 NC_001875.2 + 18158 0.7 0.590761
Target:  5'- -uGGUgcgGCGCGCGCGACgCCGCCa- -3'
miRNA:   3'- cuCUAga-UGCGCGCGUUGgGGUGGca -5'
6797 5' -57 NC_001875.2 + 18277 0.71 0.570377
Target:  5'- uGGcgCgcCGUGCGCGACCgCGCCGUu -3'
miRNA:   3'- cUCuaGauGCGCGCGUUGGgGUGGCA- -5'
6797 5' -57 NC_001875.2 + 18293 0.7 0.642123
Target:  5'- aAGGccgCUuCGCGCGCuuauuGGCCCCGCCGc -3'
miRNA:   3'- cUCUa--GAuGCGCGCG-----UUGGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 21836 0.74 0.391384
Target:  5'- -cGAgCUGCGCGCGCGucaACgCCACCGa -3'
miRNA:   3'- cuCUaGAUGCGCGCGU---UGgGGUGGCa -5'
6797 5' -57 NC_001875.2 + 21995 0.68 0.743134
Target:  5'- ------aACGCGCGCAGCaaauCCGCCGg -3'
miRNA:   3'- cucuagaUGCGCGCGUUGg---GGUGGCa -5'
6797 5' -57 NC_001875.2 + 26243 0.66 0.850627
Target:  5'- ---cUCUugGCGCugcgGCGugUCCACCGc -3'
miRNA:   3'- cucuAGAugCGCG----CGUugGGGUGGCa -5'
6797 5' -57 NC_001875.2 + 30936 0.68 0.72342
Target:  5'- cGAGcGUCUccGCGCGCuGCGGCgCCCggACCGg -3'
miRNA:   3'- -CUC-UAGA--UGCGCG-CGUUG-GGG--UGGCa -5'
6797 5' -57 NC_001875.2 + 31919 0.66 0.817326
Target:  5'- -cGcgCUGCaccGCGCGCGGgCCCGCuCGUu -3'
miRNA:   3'- cuCuaGAUG---CGCGCGUUgGGGUG-GCA- -5'
6797 5' -57 NC_001875.2 + 34414 0.68 0.713439
Target:  5'- uGAGGUUUACGUaCGCggUCgCCGCCGc -3'
miRNA:   3'- -CUCUAGAUGCGcGCGuuGG-GGUGGCa -5'
6797 5' -57 NC_001875.2 + 37106 0.71 0.530187
Target:  5'- uGGGUgUGCGgGCGCGGCgCCgCGCCGg -3'
miRNA:   3'- cUCUAgAUGCgCGCGUUG-GG-GUGGCa -5'
6797 5' -57 NC_001875.2 + 40448 0.66 0.840133
Target:  5'- cGAGA---ACGUGgGCAGCCCCgagggcguggugguGCCGg -3'
miRNA:   3'- -CUCUagaUGCGCgCGUUGGGG--------------UGGCa -5'
6797 5' -57 NC_001875.2 + 41148 0.66 0.834348
Target:  5'- -------cCGCGCcgGCAACCCCAUCGUc -3'
miRNA:   3'- cucuagauGCGCG--CGUUGGGGUGGCA- -5'
6797 5' -57 NC_001875.2 + 42295 0.67 0.762456
Target:  5'- cAGG-CUGCGCGUGCGuauagacgAUCCCGCCu- -3'
miRNA:   3'- cUCUaGAUGCGCGCGU--------UGGGGUGGca -5'
6797 5' -57 NC_001875.2 + 42317 0.66 0.834348
Target:  5'- cAGAUCgaGCGCGCccaGCGGCCCCAggCGg -3'
miRNA:   3'- cUCUAGa-UGCGCG---CGUUGGGGUg-GCa -5'
6797 5' -57 NC_001875.2 + 43417 0.71 0.570377
Target:  5'- cAGAUUUGCGCGUGCGugCCguCCu- -3'
miRNA:   3'- cUCUAGAUGCGCGCGUugGGguGGca -5'
6797 5' -57 NC_001875.2 + 47623 0.71 0.540147
Target:  5'- uGGAcgaGCGCGCGCGGCCCUacuACCGg -3'
miRNA:   3'- cUCUagaUGCGCGCGUUGGGG---UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.