Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6801 | 3' | -56.8 | NC_001875.2 | + | 65077 | 1.08 | 0.002039 |
Target: 5'- cCAACACGCUGGGCAAGGACGCGCUCAa -3' miRNA: 3'- -GUUGUGCGACCCGUUCCUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 99070 | 0.78 | 0.222981 |
Target: 5'- --cCACGCcGcGCGAGGACGCGCUCGa -3' miRNA: 3'- guuGUGCGaCcCGUUCCUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 128961 | 0.78 | 0.23426 |
Target: 5'- aGGCGugaGCUGGGCGAGcggauGACGCGCUCGc -3' miRNA: 3'- gUUGUg--CGACCCGUUC-----CUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 88361 | 0.77 | 0.264557 |
Target: 5'- gCAGCGUGCacGGGCAaaAGGGCGUGCUCAa -3' miRNA: 3'- -GUUGUGCGa-CCCGU--UCCUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 42747 | 0.76 | 0.297955 |
Target: 5'- gCGACGCGCauGGUGAGcGGCGCGCUCGg -3' miRNA: 3'- -GUUGUGCGacCCGUUC-CUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 39101 | 0.76 | 0.315113 |
Target: 5'- cCAACGCGCUGcugcaccgguuagcuGGCGGGcaGCGCGCUCAa -3' miRNA: 3'- -GUUGUGCGAC---------------CCGUUCc-UGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 7046 | 0.74 | 0.382611 |
Target: 5'- --cCACGCUGGuGCAAGacauaauccGCGCGCUCAa -3' miRNA: 3'- guuGUGCGACC-CGUUCc--------UGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 111190 | 0.74 | 0.391059 |
Target: 5'- gGGCGCGCUGGGC---GGCGCGCg-- -3' miRNA: 3'- gUUGUGCGACCCGuucCUGCGCGagu -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 87833 | 0.74 | 0.399628 |
Target: 5'- aCAGCACGCUGGGCAcGG-CGCcCgUCGg -3' miRNA: 3'- -GUUGUGCGACCCGUuCCuGCGcG-AGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 89506 | 0.74 | 0.408316 |
Target: 5'- gCGACuGCGCUuccgccugGGGCcgcuGGGCGCGCUCGa -3' miRNA: 3'- -GUUG-UGCGA--------CCCGuu--CCUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 65770 | 0.72 | 0.472269 |
Target: 5'- cCGGCG-GCUGGGCGAGcACGCGCg-- -3' miRNA: 3'- -GUUGUgCGACCCGUUCcUGCGCGagu -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 16049 | 0.72 | 0.491461 |
Target: 5'- uCGACGCaGCUGGGacgaauugcuCGAGGACG-GCUCGc -3' miRNA: 3'- -GUUGUG-CGACCC----------GUUCCUGCgCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 115862 | 0.72 | 0.495342 |
Target: 5'- aCAACACGUUgcggccgcucuggccGGGC-AGGAUGCGgUCAa -3' miRNA: 3'- -GUUGUGCGA---------------CCCGuUCCUGCGCgAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 94310 | 0.72 | 0.520898 |
Target: 5'- cCAGCAgGUUGGGCGcguccaggcAGGGCGCGUcgUCc -3' miRNA: 3'- -GUUGUgCGACCCGU---------UCCUGCGCG--AGu -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 54363 | 0.72 | 0.520898 |
Target: 5'- cCGGCGCGUUGGGCGAGcGcACGC-CUUg -3' miRNA: 3'- -GUUGUGCGACCCGUUC-C-UGCGcGAGu -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 33223 | 0.71 | 0.530865 |
Target: 5'- aAACACGC-GGGCuccgacGuGGCGCGCUCu -3' miRNA: 3'- gUUGUGCGaCCCGuu----C-CUGCGCGAGu -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 8815 | 0.71 | 0.540901 |
Target: 5'- --uCGgGUUGGGCAGGcGGCGCGCcCAa -3' miRNA: 3'- guuGUgCGACCCGUUC-CUGCGCGaGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 124710 | 0.71 | 0.561154 |
Target: 5'- cCAACGCGCcuGGCAAGcGGCGCGUggcggUCAa -3' miRNA: 3'- -GUUGUGCGacCCGUUC-CUGCGCG-----AGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 47261 | 0.71 | 0.570337 |
Target: 5'- -uGCACcaGC-GGGUcacgaccGAGGACGCGCUCGa -3' miRNA: 3'- guUGUG--CGaCCCG-------UUCCUGCGCGAGU- -5' |
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6801 | 3' | -56.8 | NC_001875.2 | + | 82715 | 0.71 | 0.571359 |
Target: 5'- cCAGuCGCGCagGGGCAcGGGGCaGCGCUUu -3' miRNA: 3'- -GUU-GUGCGa-CCCGU-UCCUG-CGCGAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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