miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 3' -56.8 NC_001875.2 + 41685 0.66 0.828317
Target:  5'- aCAGCGCGUcaauuuccUGGGCcAGGGCguaugcgcgGCGCUg- -3'
miRNA:   3'- -GUUGUGCG--------ACCCGuUCCUG---------CGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 36666 0.67 0.755018
Target:  5'- -uGCGCGCUGaGCucGGGGCGCG-UCAc -3'
miRNA:   3'- guUGUGCGACcCGu-UCCUGCGCgAGU- -5'
6801 3' -56.8 NC_001875.2 + 10865 0.67 0.755018
Target:  5'- aCGACGCGgUGGccGCGucGGugGCGCUg- -3'
miRNA:   3'- -GUUGUGCgACC--CGUu-CCugCGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 128764 0.67 0.764667
Target:  5'- -uGCACGCcgUGGGCGAccccGGCGCGC-CGc -3'
miRNA:   3'- guUGUGCG--ACCCGUUc---CUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 10447 0.67 0.774196
Target:  5'- gCAGCuuugACGC-GGcGCGGcGGCGCGCUCAg -3'
miRNA:   3'- -GUUG----UGCGaCC-CGUUcCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 37520 0.67 0.783595
Target:  5'- aCGACGCGCccuGCcuGGACGCGCcCAa -3'
miRNA:   3'- -GUUGUGCGaccCGuuCCUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 25277 0.67 0.801965
Target:  5'- aGACGgGCacuacGGGCGAcuGGucGCGCGCUCGu -3'
miRNA:   3'- gUUGUgCGa----CCCGUU--CC--UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 66608 0.66 0.810918
Target:  5'- -uGCAUGUUgucGGGCAGcGuGGCGCGCUUg -3'
miRNA:   3'- guUGUGCGA---CCCGUU-C-CUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 43283 0.66 0.823171
Target:  5'- aCAACAUGUaggggauguuaaauaUGGGguAGcGGCGCGCgcgCGg -3'
miRNA:   3'- -GUUGUGCG---------------ACCCguUC-CUGCGCGa--GU- -5'
6801 3' -56.8 NC_001875.2 + 87248 0.68 0.745257
Target:  5'- -cGCGCGCUGGGCcaaaaauuGGACgccauuacgGCGCUa- -3'
miRNA:   3'- guUGUGCGACCCGuu------CCUG---------CGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 39654 0.68 0.745257
Target:  5'- -cGCGCGCgaguuUGGGCcGGcGGCGCGCg-- -3'
miRNA:   3'- guUGUGCG-----ACCCGuUC-CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 72552 0.68 0.705294
Target:  5'- aCAACggGCGCUgcGGGCGcGGGCGCGggCGc -3'
miRNA:   3'- -GUUG--UGCGA--CCCGUuCCUGCGCgaGU- -5'
6801 3' -56.8 NC_001875.2 + 42747 0.76 0.297955
Target:  5'- gCGACGCGCauGGUGAGcGGCGCGCUCGg -3'
miRNA:   3'- -GUUGUGCGacCCGUUC-CUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 16049 0.72 0.491461
Target:  5'- uCGACGCaGCUGGGacgaauugcuCGAGGACG-GCUCGc -3'
miRNA:   3'- -GUUGUG-CGACCC----------GUUCCUGCgCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 8815 0.71 0.540901
Target:  5'- --uCGgGUUGGGCAGGcGGCGCGCcCAa -3'
miRNA:   3'- guuGUgCGACCCGUUC-CUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 47261 0.71 0.570337
Target:  5'- -uGCACcaGC-GGGUcacgaccGAGGACGCGCUCGa -3'
miRNA:   3'- guUGUG--CGaCCCG-------UUCCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 82715 0.71 0.571359
Target:  5'- cCAGuCGCGCagGGGCAcGGGGCaGCGCUUu -3'
miRNA:   3'- -GUU-GUGCGa-CCCGU-UCCUG-CGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 80615 0.7 0.633269
Target:  5'- --uCACGgUGGGCGcgcGGaacGCGCGCUCGa -3'
miRNA:   3'- guuGUGCgACCCGUu--CC---UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 130748 0.69 0.694101
Target:  5'- gGGCGCGCUGGGUAuaaauacAGGcguCGCGauCUCGu -3'
miRNA:   3'- gUUGUGCGACCCGU-------UCCu--GCGC--GAGU- -5'
6801 3' -56.8 NC_001875.2 + 5921 0.69 0.695121
Target:  5'- gCAugGCGUUGGGUAGcgccgcgcagguGGGCGCGgcCUCGc -3'
miRNA:   3'- -GUugUGCGACCCGUU------------CCUGCGC--GAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.