miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 3' -56.8 NC_001875.2 + 3037 0.67 0.801061
Target:  5'- -uACACGCcguUGGGCAgcgcguaAGaGGCGCGCa-- -3'
miRNA:   3'- guUGUGCG---ACCCGU-------UC-CUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 3875 0.66 0.853024
Target:  5'- gCAGCACcgcgccgccaaGCUGGGCAggcuguacaAGGcuaagaagcuGCGCGCUgAg -3'
miRNA:   3'- -GUUGUG-----------CGACCCGU---------UCC----------UGCGCGAgU- -5'
6801 3' -56.8 NC_001875.2 + 5921 0.69 0.695121
Target:  5'- gCAugGCGUUGGGUAGcgccgcgcagguGGGCGCGgcCUCGc -3'
miRNA:   3'- -GUugUGCGACCCGUU------------CCUGCGC--GAGU- -5'
6801 3' -56.8 NC_001875.2 + 6657 0.67 0.792854
Target:  5'- cCAGCACGCgcaaucUGGGCAAcGGC-CGCUUc -3'
miRNA:   3'- -GUUGUGCG------ACCCGUUcCUGcGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 7046 0.74 0.382611
Target:  5'- --cCACGCUGGuGCAAGacauaauccGCGCGCUCAa -3'
miRNA:   3'- guuGUGCGACC-CGUUCc--------UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 8190 0.66 0.819705
Target:  5'- uGACuuGCUGGGUggGGuCGC-CUUg -3'
miRNA:   3'- gUUGugCGACCCGuuCCuGCGcGAGu -5'
6801 3' -56.8 NC_001875.2 + 8815 0.71 0.540901
Target:  5'- --uCGgGUUGGGCAGGcGGCGCGCcCAa -3'
miRNA:   3'- guuGUgCGACCCGUUC-CUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 9815 0.66 0.848224
Target:  5'- ---aACGUUGGGCc-GGACcagugcuacccaaaaGCGCUCAu -3'
miRNA:   3'- guugUGCGACCCGuuCCUG---------------CGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 10447 0.67 0.774196
Target:  5'- gCAGCuuugACGC-GGcGCGGcGGCGCGCUCAg -3'
miRNA:   3'- -GUUG----UGCGaCC-CGUUcCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 10865 0.67 0.755018
Target:  5'- aCGACGCGgUGGccGCGucGGugGCGCUg- -3'
miRNA:   3'- -GUUGUGCgACC--CGUu-CCugCGCGAgu -5'
6801 3' -56.8 NC_001875.2 + 15255 0.66 0.819705
Target:  5'- cCAuCACGCUGcgcaccaccGGCGGcGugGUGCUCAa -3'
miRNA:   3'- -GUuGUGCGAC---------CCGUUcCugCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 16049 0.72 0.491461
Target:  5'- uCGACGCaGCUGGGacgaauugcuCGAGGACG-GCUCGc -3'
miRNA:   3'- -GUUGUG-CGACCC----------GUUCCUGCgCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 20705 0.67 0.764667
Target:  5'- gAACACG-UGGG-AAGGugGCGC-CGu -3'
miRNA:   3'- gUUGUGCgACCCgUUCCugCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 25277 0.67 0.801965
Target:  5'- aGACGgGCacuacGGGCGAcuGGucGCGCGCUCGu -3'
miRNA:   3'- gUUGUgCGa----CCCGUU--CC--UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 29032 0.66 0.819705
Target:  5'- gCGGCG-GCgacGGGCuaaacGACGCGCUCAa -3'
miRNA:   3'- -GUUGUgCGa--CCCGuuc--CUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 33223 0.71 0.530865
Target:  5'- aAACACGC-GGGCuccgacGuGGCGCGCUCu -3'
miRNA:   3'- gUUGUGCGaCCCGuu----C-CUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 35038 0.67 0.768494
Target:  5'- uGACgGCGCUGGGCAuuguGcGAacguggucccaaaacCGCGCUCu -3'
miRNA:   3'- gUUG-UGCGACCCGUu---C-CU---------------GCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 36104 0.69 0.695121
Target:  5'- gCAGCACGC--GGCGGcGGCGCcGCUCAu -3'
miRNA:   3'- -GUUGUGCGacCCGUUcCUGCG-CGAGU- -5'
6801 3' -56.8 NC_001875.2 + 36666 0.67 0.755018
Target:  5'- -uGCGCGCUGaGCucGGGGCGCG-UCAc -3'
miRNA:   3'- guUGUGCGACcCGu-UCCUGCGCgAGU- -5'
6801 3' -56.8 NC_001875.2 + 37520 0.67 0.783595
Target:  5'- aCGACGCGCccuGCcuGGACGCGCcCAa -3'
miRNA:   3'- -GUUGUGCGaccCGuuCCUGCGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.