miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 3' -56.8 NC_001875.2 + 65077 1.08 0.002039
Target:  5'- cCAACACGCUGGGCAAGGACGCGCUCAa -3'
miRNA:   3'- -GUUGUGCGACCCGUUCCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 99070 0.78 0.222981
Target:  5'- --cCACGCcGcGCGAGGACGCGCUCGa -3'
miRNA:   3'- guuGUGCGaCcCGUUCCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 128961 0.78 0.23426
Target:  5'- aGGCGugaGCUGGGCGAGcggauGACGCGCUCGc -3'
miRNA:   3'- gUUGUg--CGACCCGUUC-----CUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 88361 0.77 0.264557
Target:  5'- gCAGCGUGCacGGGCAaaAGGGCGUGCUCAa -3'
miRNA:   3'- -GUUGUGCGa-CCCGU--UCCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 42747 0.76 0.297955
Target:  5'- gCGACGCGCauGGUGAGcGGCGCGCUCGg -3'
miRNA:   3'- -GUUGUGCGacCCGUUC-CUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 39101 0.76 0.315113
Target:  5'- cCAACGCGCUGcugcaccgguuagcuGGCGGGcaGCGCGCUCAa -3'
miRNA:   3'- -GUUGUGCGAC---------------CCGUUCc-UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 7046 0.74 0.382611
Target:  5'- --cCACGCUGGuGCAAGacauaauccGCGCGCUCAa -3'
miRNA:   3'- guuGUGCGACC-CGUUCc--------UGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 111190 0.74 0.391059
Target:  5'- gGGCGCGCUGGGC---GGCGCGCg-- -3'
miRNA:   3'- gUUGUGCGACCCGuucCUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 87833 0.74 0.399628
Target:  5'- aCAGCACGCUGGGCAcGG-CGCcCgUCGg -3'
miRNA:   3'- -GUUGUGCGACCCGUuCCuGCGcG-AGU- -5'
6801 3' -56.8 NC_001875.2 + 89506 0.74 0.408316
Target:  5'- gCGACuGCGCUuccgccugGGGCcgcuGGGCGCGCUCGa -3'
miRNA:   3'- -GUUG-UGCGA--------CCCGuu--CCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 65770 0.72 0.472269
Target:  5'- cCGGCG-GCUGGGCGAGcACGCGCg-- -3'
miRNA:   3'- -GUUGUgCGACCCGUUCcUGCGCGagu -5'
6801 3' -56.8 NC_001875.2 + 16049 0.72 0.491461
Target:  5'- uCGACGCaGCUGGGacgaauugcuCGAGGACG-GCUCGc -3'
miRNA:   3'- -GUUGUG-CGACCC----------GUUCCUGCgCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 115862 0.72 0.495342
Target:  5'- aCAACACGUUgcggccgcucuggccGGGC-AGGAUGCGgUCAa -3'
miRNA:   3'- -GUUGUGCGA---------------CCCGuUCCUGCGCgAGU- -5'
6801 3' -56.8 NC_001875.2 + 94310 0.72 0.520898
Target:  5'- cCAGCAgGUUGGGCGcguccaggcAGGGCGCGUcgUCc -3'
miRNA:   3'- -GUUGUgCGACCCGU---------UCCUGCGCG--AGu -5'
6801 3' -56.8 NC_001875.2 + 54363 0.72 0.520898
Target:  5'- cCGGCGCGUUGGGCGAGcGcACGC-CUUg -3'
miRNA:   3'- -GUUGUGCGACCCGUUC-C-UGCGcGAGu -5'
6801 3' -56.8 NC_001875.2 + 33223 0.71 0.530865
Target:  5'- aAACACGC-GGGCuccgacGuGGCGCGCUCu -3'
miRNA:   3'- gUUGUGCGaCCCGuu----C-CUGCGCGAGu -5'
6801 3' -56.8 NC_001875.2 + 8815 0.71 0.540901
Target:  5'- --uCGgGUUGGGCAGGcGGCGCGCcCAa -3'
miRNA:   3'- guuGUgCGACCCGUUC-CUGCGCGaGU- -5'
6801 3' -56.8 NC_001875.2 + 124710 0.71 0.561154
Target:  5'- cCAACGCGCcuGGCAAGcGGCGCGUggcggUCAa -3'
miRNA:   3'- -GUUGUGCGacCCGUUC-CUGCGCG-----AGU- -5'
6801 3' -56.8 NC_001875.2 + 47261 0.71 0.570337
Target:  5'- -uGCACcaGC-GGGUcacgaccGAGGACGCGCUCGa -3'
miRNA:   3'- guUGUG--CGaCCCG-------UUCCUGCGCGAGU- -5'
6801 3' -56.8 NC_001875.2 + 82715 0.71 0.571359
Target:  5'- cCAGuCGCGCagGGGCAcGGGGCaGCGCUUu -3'
miRNA:   3'- -GUU-GUGCGa-CCCGU-UCCUG-CGCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.