miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 5' -58.7 NC_001875.2 + 65111 1.1 0.00098
Target:  5'- gGCCAAGCAGCUCAGCCUCGCCGUGCAg -3'
miRNA:   3'- -CGGUUCGUCGAGUCGGAGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 10040 0.73 0.336787
Target:  5'- aGCCAcAGCuGCUCGaCUaCGCCGUGCAg -3'
miRNA:   3'- -CGGU-UCGuCGAGUcGGaGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 33633 0.73 0.344462
Target:  5'- cGCCGGGCAGUUgCAGCCgcucaccucgaCGCCGUcgGCGg -3'
miRNA:   3'- -CGGUUCGUCGA-GUCGGa----------GCGGCA--CGU- -5'
6801 5' -58.7 NC_001875.2 + 72497 0.73 0.349127
Target:  5'- aCCGAGCAGCaaauguggcacugCAGCCUCaCCGUGUc -3'
miRNA:   3'- cGGUUCGUCGa------------GUCGGAGcGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 127402 0.73 0.351477
Target:  5'- gGCCAaagugcuGGCGGCgcgcgUCAGCaugcCGCCGUGCAu -3'
miRNA:   3'- -CGGU-------UCGUCG-----AGUCGga--GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 122521 0.72 0.379707
Target:  5'- gGCCGGGCAGCUUcGCCgauugcguccggcgCGCaGUGCAc -3'
miRNA:   3'- -CGGUUCGUCGAGuCGGa-------------GCGgCACGU- -5'
6801 5' -58.7 NC_001875.2 + 84866 0.71 0.419048
Target:  5'- cGCuCAucGCGGCUCAccGUCUCGCCcUGCAg -3'
miRNA:   3'- -CG-GUu-CGUCGAGU--CGGAGCGGcACGU- -5'
6801 5' -58.7 NC_001875.2 + 2308 0.71 0.436908
Target:  5'- gGCCGcgcGCAGCUCGGCCagcUCGgCC-UGCAg -3'
miRNA:   3'- -CGGUu--CGUCGAGUCGG---AGC-GGcACGU- -5'
6801 5' -58.7 NC_001875.2 + 45979 0.71 0.455197
Target:  5'- cGCCGcuGCGGCgaa--CUCGCCGUGCAc -3'
miRNA:   3'- -CGGUu-CGUCGagucgGAGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 50030 0.7 0.483382
Target:  5'- cGCCGGGCGGCgaggCGGCCggccCGUCGcUGUc -3'
miRNA:   3'- -CGGUUCGUCGa---GUCGGa---GCGGC-ACGu -5'
6801 5' -58.7 NC_001875.2 + 93310 0.7 0.502631
Target:  5'- cGCCAGuuacCAGCUCGGCCgagCGCUcaGCAg -3'
miRNA:   3'- -CGGUUc---GUCGAGUCGGa--GCGGcaCGU- -5'
6801 5' -58.7 NC_001875.2 + 37233 0.7 0.522207
Target:  5'- cGCCGcuGCAGCUCAGCgaacCGCCGUa-- -3'
miRNA:   3'- -CGGUu-CGUCGAGUCGga--GCGGCAcgu -5'
6801 5' -58.7 NC_001875.2 + 115578 0.7 0.526158
Target:  5'- cGCCGGGCAccacgugacgcacgcGCgugaCGGCCUCGUCGccGCAg -3'
miRNA:   3'- -CGGUUCGU---------------CGa---GUCGGAGCGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 91751 0.69 0.552097
Target:  5'- aGCCAguGGCgcgucAGCgccgCGGCCUCGUCGUaguGCGg -3'
miRNA:   3'- -CGGU--UCG-----UCGa---GUCGGAGCGGCA---CGU- -5'
6801 5' -58.7 NC_001875.2 + 108145 0.69 0.562179
Target:  5'- gGCCGuugAGUauauugGGCcgCAGCCUgGUCGUGCAc -3'
miRNA:   3'- -CGGU---UCG------UCGa-GUCGGAgCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 122024 0.69 0.562179
Target:  5'- cGCCcguuuuuuauAGCAGC-C-GCCgauggCGCCGUGCAa -3'
miRNA:   3'- -CGGu---------UCGUCGaGuCGGa----GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 91403 0.69 0.57231
Target:  5'- cGCCAgcGGCAGCUCgcaauugaugGGCCgcagcUCGCUGUaGCu -3'
miRNA:   3'- -CGGU--UCGUCGAG----------UCGG-----AGCGGCA-CGu -5'
6801 5' -58.7 NC_001875.2 + 58178 0.69 0.57231
Target:  5'- cGCCGcagcAGCAGCcgCAGCCgccgcaGCCGccGCAg -3'
miRNA:   3'- -CGGU----UCGUCGa-GUCGGag----CGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 49791 0.68 0.582484
Target:  5'- gGCC-AGCAuuccGCUCAGCC-CGCCGcgaUGUc -3'
miRNA:   3'- -CGGuUCGU----CGAGUCGGaGCGGC---ACGu -5'
6801 5' -58.7 NC_001875.2 + 129539 0.68 0.582484
Target:  5'- gGCCGAGCuGCgcgCGGCCacggCGCgCGcGCAu -3'
miRNA:   3'- -CGGUUCGuCGa--GUCGGa---GCG-GCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.