miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 5' -58.7 NC_001875.2 + 1147 0.67 0.664554
Target:  5'- gGCCGuGGCAaaaGUggGGCCgcgUGCCGUGCAu -3'
miRNA:   3'- -CGGU-UCGU---CGagUCGGa--GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 2308 0.71 0.436908
Target:  5'- gGCCGcgcGCAGCUCGGCCagcUCGgCC-UGCAg -3'
miRNA:   3'- -CGGUu--CGUCGAGUCGG---AGC-GGcACGU- -5'
6801 5' -58.7 NC_001875.2 + 2900 0.66 0.744874
Target:  5'- cGCCuuAGCcGCUCGuGCCUauucacCGCCucGUGCAa -3'
miRNA:   3'- -CGGu-UCGuCGAGU-CGGA------GCGG--CACGU- -5'
6801 5' -58.7 NC_001875.2 + 3000 0.67 0.67478
Target:  5'- uUCGGGCGGgUUGaagugcGCgUCGCCGUGCAa -3'
miRNA:   3'- cGGUUCGUCgAGU------CGgAGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 9627 0.68 0.63375
Target:  5'- uGCUAAGCuGCgu-GCgCgCGCCGUGCGu -3'
miRNA:   3'- -CGGUUCGuCGaguCG-GaGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 10040 0.73 0.336787
Target:  5'- aGCCAcAGCuGCUCGaCUaCGCCGUGCAg -3'
miRNA:   3'- -CGGU-UCGuCGAGUcGGaGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 12285 0.68 0.613193
Target:  5'- gGCCAccguguGCAGC-CGGCacgcCGCCGUGUg -3'
miRNA:   3'- -CGGUu-----CGUCGaGUCGga--GCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 13802 0.66 0.735085
Target:  5'- -gCGGGUGGCgCGGCgUUGCCGUcGCAc -3'
miRNA:   3'- cgGUUCGUCGaGUCGgAGCGGCA-CGU- -5'
6801 5' -58.7 NC_001875.2 + 18335 0.67 0.643002
Target:  5'- cGCCGacuuugcAGCAGCUCGGCauggaCGCCaacggcGUGCu -3'
miRNA:   3'- -CGGU-------UCGUCGAGUCGga---GCGG------CACGu -5'
6801 5' -58.7 NC_001875.2 + 19140 0.66 0.705213
Target:  5'- gGCCAAGCgcuGGC-CAGCagCUCGCUGUaCAc -3'
miRNA:   3'- -CGGUUCG---UCGaGUCG--GAGCGGCAcGU- -5'
6801 5' -58.7 NC_001875.2 + 20039 0.66 0.754563
Target:  5'- aGCCAGGC-GCcgUCGGCCgcgugcacCGCCGUcaccaGCGa -3'
miRNA:   3'- -CGGUUCGuCG--AGUCGGa-------GCGGCA-----CGU- -5'
6801 5' -58.7 NC_001875.2 + 21324 0.66 0.705213
Target:  5'- cGCCAGGUGGCccgCGGCCaccugggCGaCGUGCu -3'
miRNA:   3'- -CGGUUCGUCGa--GUCGGa------GCgGCACGu -5'
6801 5' -58.7 NC_001875.2 + 23810 0.67 0.67478
Target:  5'- cGCUccGCGGCgUCGGgCgCGCCGUGUc -3'
miRNA:   3'- -CGGuuCGUCG-AGUCgGaGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 27192 0.68 0.592693
Target:  5'- cGUCAGGUGGCacgcgcuaggaUCGGCCUUGUCG-GCGc -3'
miRNA:   3'- -CGGUUCGUCG-----------AGUCGGAGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 32558 0.67 0.64403
Target:  5'- cGCCGaggAGCGGCUgCAGCagUGCCGcGCGc -3'
miRNA:   3'- -CGGU---UCGUCGA-GUCGgaGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 32801 0.67 0.684972
Target:  5'- cGCCGcgccGGCaAGCUCGGCgaacggCGCCGcuUGCGa -3'
miRNA:   3'- -CGGU----UCG-UCGAGUCGga----GCGGC--ACGU- -5'
6801 5' -58.7 NC_001875.2 + 33633 0.73 0.344462
Target:  5'- cGCCGGGCAGUUgCAGCCgcucaccucgaCGCCGUcgGCGg -3'
miRNA:   3'- -CGGUUCGUCGA-GUCGGa----------GCGGCA--CGU- -5'
6801 5' -58.7 NC_001875.2 + 37233 0.7 0.522207
Target:  5'- cGCCGcuGCAGCUCAGCgaacCGCCGUa-- -3'
miRNA:   3'- -CGGUu-CGUCGAGUCGga--GCGGCAcgu -5'
6801 5' -58.7 NC_001875.2 + 39274 0.66 0.729167
Target:  5'- cGCgGGGCGGCuUCuGCC-CGCCGacaccaagugcgcgcUGCAc -3'
miRNA:   3'- -CGgUUCGUCG-AGuCGGaGCGGC---------------ACGU- -5'
6801 5' -58.7 NC_001875.2 + 39581 0.66 0.754563
Target:  5'- gGCCGcGCuGCUCAGCaCggucCGC-GUGCAc -3'
miRNA:   3'- -CGGUuCGuCGAGUCG-Ga---GCGgCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.