miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 5' -58.7 NC_001875.2 + 49858 0.66 0.725205
Target:  5'- cGCCGGcCGGCgc-GCCUUGCCG-GCGc -3'
miRNA:   3'- -CGGUUcGUCGaguCGGAGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 55865 0.67 0.664554
Target:  5'- uCCGGGUcguuGCUgAGCCccUCGCUGUGCc -3'
miRNA:   3'- cGGUUCGu---CGAgUCGG--AGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 23810 0.67 0.67478
Target:  5'- cGCUccGCGGCgUCGGgCgCGCCGUGUc -3'
miRNA:   3'- -CGGuuCGUCG-AGUCgGaGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 65723 0.67 0.684972
Target:  5'- -gCGGGCGGCgccGCCUCGCCGcccGCc -3'
miRNA:   3'- cgGUUCGUCGaguCGGAGCGGCa--CGu -5'
6801 5' -58.7 NC_001875.2 + 32801 0.67 0.684972
Target:  5'- cGCCGcgccGGCaAGCUCGGCgaacggCGCCGcuUGCGa -3'
miRNA:   3'- -CGGU----UCG-UCGAGUCGga----GCGGC--ACGU- -5'
6801 5' -58.7 NC_001875.2 + 74094 0.67 0.684972
Target:  5'- aCCu-GCAGUugggCAGCgaCGCCGUGCu -3'
miRNA:   3'- cGGuuCGUCGa---GUCGgaGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 71617 0.67 0.693093
Target:  5'- aUCAAGCgcgAGCUCGGCCgcuucaaucugcCGCCG-GCGc -3'
miRNA:   3'- cGGUUCG---UCGAGUCGGa-----------GCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 21324 0.66 0.705213
Target:  5'- cGCCAGGUGGCccgCGGCCaccugggCGaCGUGCu -3'
miRNA:   3'- -CGGUUCGUCGa--GUCGGa------GCgGCACGu -5'
6801 5' -58.7 NC_001875.2 + 63680 0.66 0.725205
Target:  5'- cGUCuugcGCGGCgcgCAGCgUUCGCCGaUGCGg -3'
miRNA:   3'- -CGGuu--CGUCGa--GUCG-GAGCGGC-ACGU- -5'
6801 5' -58.7 NC_001875.2 + 84350 0.67 0.658404
Target:  5'- gGCgGAGCGGCUgcgccgguaggugcgCGGCCU-GCCGggGCGg -3'
miRNA:   3'- -CGgUUCGUCGA---------------GUCGGAgCGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 102003 0.67 0.654301
Target:  5'- uGCCGGGCA-CggGGCCgUCgGCCGUGCc -3'
miRNA:   3'- -CGGUUCGUcGagUCGG-AG-CGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 12285 0.68 0.613193
Target:  5'- gGCCAccguguGCAGC-CGGCacgcCGCCGUGUg -3'
miRNA:   3'- -CGGUu-----CGUCGaGUCGga--GCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 72497 0.73 0.349127
Target:  5'- aCCGAGCAGCaaauguggcacugCAGCCUCaCCGUGUc -3'
miRNA:   3'- cGGUUCGUCGa------------GUCGGAGcGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 84866 0.71 0.419048
Target:  5'- cGCuCAucGCGGCUCAccGUCUCGCCcUGCAg -3'
miRNA:   3'- -CG-GUu-CGUCGAGU--CGGAGCGGcACGU- -5'
6801 5' -58.7 NC_001875.2 + 50030 0.7 0.483382
Target:  5'- cGCCGGGCGGCgaggCGGCCggccCGUCGcUGUc -3'
miRNA:   3'- -CGGUUCGUCGa---GUCGGa---GCGGC-ACGu -5'
6801 5' -58.7 NC_001875.2 + 93310 0.7 0.502631
Target:  5'- cGCCAGuuacCAGCUCGGCCgagCGCUcaGCAg -3'
miRNA:   3'- -CGGUUc---GUCGAGUCGGa--GCGGcaCGU- -5'
6801 5' -58.7 NC_001875.2 + 58178 0.69 0.57231
Target:  5'- cGCCGcagcAGCAGCcgCAGCCgccgcaGCCGccGCAg -3'
miRNA:   3'- -CGGU----UCGUCGa-GUCGGag----CGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 91403 0.69 0.57231
Target:  5'- cGCCAgcGGCAGCUCgcaauugaugGGCCgcagcUCGCUGUaGCu -3'
miRNA:   3'- -CGGU--UCGUCGAG----------UCGG-----AGCGGCA-CGu -5'
6801 5' -58.7 NC_001875.2 + 129539 0.68 0.582484
Target:  5'- gGCCGAGCuGCgcgCGGCCacggCGCgCGcGCAu -3'
miRNA:   3'- -CGGUUCGuCGa--GUCGGa---GCG-GCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 27192 0.68 0.592693
Target:  5'- cGUCAGGUGGCacgcgcuaggaUCGGCCUUGUCG-GCGc -3'
miRNA:   3'- -CGGUUCGUCG-----------AGUCGGAGCGGCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.