miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6827 5' -50.9 NC_001875.2 + 122131 0.66 0.981126
Target:  5'- -cGGGCGCG-GCGCggccGgcGCGCAc -3'
miRNA:   3'- aaCUUGUGCaCGCGaaa-CuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 34204 0.66 0.981126
Target:  5'- gUGAACACGaacGCGUUUUcu-GCGCAc -3'
miRNA:   3'- aACUUGUGCa--CGCGAAAcuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 120844 0.66 0.981126
Target:  5'- aUGGGCACGcGCGCc-UGcAGCGCu- -3'
miRNA:   3'- aACUUGUGCaCGCGaaACuUCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 2547 0.66 0.978774
Target:  5'- gUGAACaACG-GCGCguc-GGGCGCAAa -3'
miRNA:   3'- aACUUG-UGCaCGCGaaacUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 4855 0.66 0.978528
Target:  5'- -gGAACGCGUGCacagcucgugcacGCUgc--GGCGCAAa -3'
miRNA:   3'- aaCUUGUGCACG-------------CGAaacuUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 11993 0.66 0.976212
Target:  5'- gUUGGGCGCGgGUGUggUGGcgAGCGCGg -3'
miRNA:   3'- -AACUUGUGCaCGCGaaACU--UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 62349 0.66 0.976212
Target:  5'- gUGGGCGCG-GCGCcagUUUGGGucGCGCGc -3'
miRNA:   3'- aACUUGUGCaCGCG---AAACUU--CGCGUu -5'
6827 5' -50.9 NC_001875.2 + 68702 0.66 0.97343
Target:  5'- gUGGACcCGUGCGCcg-GccGCGCGc -3'
miRNA:   3'- aACUUGuGCACGCGaaaCuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 67670 0.66 0.97343
Target:  5'- gUGGACACGUGCGCaaaguagUGGGccaggaucgacGCGCc- -3'
miRNA:   3'- aACUUGUGCACGCGaa-----ACUU-----------CGCGuu -5'
6827 5' -50.9 NC_001875.2 + 4882 0.66 0.97343
Target:  5'- aUG-ACACGUGCGCUcgUGucGCcgGCAu -3'
miRNA:   3'- aACuUGUGCACGCGAa-ACuuCG--CGUu -5'
6827 5' -50.9 NC_001875.2 + 32903 0.66 0.971652
Target:  5'- cUGAACACGcGCGCgucgcgcacGCGCAAc -3'
miRNA:   3'- aACUUGUGCaCGCGaaacuu---CGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 106427 0.66 0.97042
Target:  5'- aUGAgcuGCACGUauGCGCaguccUUUGuGAGCGCAAu -3'
miRNA:   3'- aACU---UGUGCA--CGCG-----AAAC-UUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 65782 0.66 0.97042
Target:  5'- -cGAGCACGcGCGCggcgucGgcGCGCGGu -3'
miRNA:   3'- aaCUUGUGCaCGCGaaa---CuuCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 72571 0.66 0.967174
Target:  5'- -cGGGCGCGgGCGCUgcgggUGcGGGCGCu- -3'
miRNA:   3'- aaCUUGUGCaCGCGAa----AC-UUCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 67206 0.66 0.966836
Target:  5'- -cGAACugGUcaaaguuGCGCUgguGGGCGCAAa -3'
miRNA:   3'- aaCUUGugCA-------CGCGAaacUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 16441 0.67 0.963683
Target:  5'- -cGGACGCG-GCGUuugccUUUGAGGUGCc- -3'
miRNA:   3'- aaCUUGUGCaCGCG-----AAACUUCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 89365 0.67 0.95994
Target:  5'- -cGuGCGCGUGCGCgugUUGcuGCGUg- -3'
miRNA:   3'- aaCuUGUGCACGCGa--AACuuCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 128311 0.67 0.951677
Target:  5'- -cGGugACGUGCGCcaaau-GCGCAAa -3'
miRNA:   3'- aaCUugUGCACGCGaaacuuCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 110739 0.67 0.947146
Target:  5'- -gGGGCGCGUGCaGUUU--AAGCGCGg -3'
miRNA:   3'- aaCUUGUGCACG-CGAAacUUCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 48399 0.67 0.947146
Target:  5'- uUUGAAUACGUGuUGCUucaaUUGAacggcAGCGCGc -3'
miRNA:   3'- -AACUUGUGCAC-GCGA----AACU-----UCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.