Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 57697 | 0.66 | 0.87184 |
Target: 5'- cGGCGGGCGccGCGCcCUCGAa------ -3' miRNA: 3'- aCCGCCCGU--CGCGcGAGUUcauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 70770 | 0.66 | 0.87184 |
Target: 5'- -cGCGGGCGGCGCaguuuuuguGCagCAAGUGg--- -3' miRNA: 3'- acCGCCCGUCGCG---------CGa-GUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 103003 | 0.66 | 0.886623 |
Target: 5'- gUGGCGugcGGCaAGUGCGCUgCGGGcGUGAc -3' miRNA: 3'- -ACCGC---CCG-UCGCGCGA-GUUCaUAUUu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 42292 | 0.66 | 0.893652 |
Target: 5'- cGGCaGGCuGCGCGUgc--GUAUAGAc -3' miRNA: 3'- aCCGcCCGuCGCGCGaguuCAUAUUU- -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 65598 | 0.66 | 0.87184 |
Target: 5'- uUGGCGGcGCAGUGCgaaacGCUCAcccGGUuuGUGu- -3' miRNA: 3'- -ACCGCC-CGUCGCG-----CGAGU---UCA--UAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 126523 | 0.66 | 0.864096 |
Target: 5'- cGGCGagcaGGUAGCGCGCaaUgGAGUGg--- -3' miRNA: 3'- aCCGC----CCGUCGCGCG--AgUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 58038 | 0.66 | 0.864096 |
Target: 5'- -cGUGGGCGGCGCGCUg--------- -3' miRNA: 3'- acCGCCCGUCGCGCGAguucauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 72567 | 0.66 | 0.864096 |
Target: 5'- gGcGCGGGCGcGgGCGCUgCGGGUGc--- -3' miRNA: 3'- aC-CGCCCGU-CgCGCGA-GUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 83006 | 0.66 | 0.882289 |
Target: 5'- cGGCGGGCuugaagcggcgccguAGCGCGCg-GAGcAUGu- -3' miRNA: 3'- aCCGCCCG---------------UCGCGCGagUUCaUAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 8822 | 0.67 | 0.822121 |
Target: 5'- gGGCaGGCGGCGCGCcCAAc------ -3' miRNA: 3'- aCCGcCCGUCGCGCGaGUUcauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 117741 | 0.67 | 0.819443 |
Target: 5'- uUGGUGuuGGCAGCGCGUUCGucacaucuaauauaAGUGa--- -3' miRNA: 3'- -ACCGC--CCGUCGCGCGAGU--------------UCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 79131 | 0.67 | 0.822121 |
Target: 5'- cGGCGGGCgccgcGGCGgGCUCGu------- -3' miRNA: 3'- aCCGCCCG-----UCGCgCGAGUucauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 84989 | 0.67 | 0.830924 |
Target: 5'- gUGGUGGGCauuuccagcAGCGUGCgCAAcGUGUGc- -3' miRNA: 3'- -ACCGCCCG---------UCGCGCGaGUU-CAUAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 37975 | 0.67 | 0.839531 |
Target: 5'- cGGCGGcCuGCGCGCUCAGc------ -3' miRNA: 3'- aCCGCCcGuCGCGCGAGUUcauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 22913 | 0.67 | 0.839531 |
Target: 5'- uUGGuCGGGCAGCGcCGCUUuaauGUc---- -3' miRNA: 3'- -ACC-GCCCGUCGC-GCGAGuu--CAuauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 131762 | 0.67 | 0.830924 |
Target: 5'- cGGauCGGGCGGCGCG-UCAuuGGUGUc-- -3' miRNA: 3'- aCC--GCCCGUCGCGCgAGU--UCAUAuuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 62823 | 0.67 | 0.830924 |
Target: 5'- cUGGUcgGGGCAGCGCGCcacCAcGUGc--- -3' miRNA: 3'- -ACCG--CCCGUCGCGCGa--GUuCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 82054 | 0.67 | 0.856125 |
Target: 5'- uUGG-GGGCGGCGCGC---AGUAc--- -3' miRNA: 3'- -ACCgCCCGUCGCGCGaguUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 3003 | 0.67 | 0.830924 |
Target: 5'- gGGCGGGUugaAGUGCGCgucgccgugCAAGuUGUAc- -3' miRNA: 3'- aCCGCCCG---UCGCGCGa--------GUUC-AUAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 23197 | 0.67 | 0.822121 |
Target: 5'- uUGGCGGuuGCAGUa-GCUCAAGUAg--- -3' miRNA: 3'- -ACCGCC--CGUCGcgCGAGUUCAUauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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