miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6837 5' -54.9 NC_001875.2 + 3003 0.67 0.830924
Target:  5'- gGGCGGGUugaAGUGCGCgucgccgugCAAGuUGUAc- -3'
miRNA:   3'- aCCGCCCG---UCGCGCGa--------GUUC-AUAUuu -5'
6837 5' -54.9 NC_001875.2 + 5923 0.69 0.745749
Target:  5'- aUGGCguuGGGUAGCGCcGCgCAGGUGg--- -3'
miRNA:   3'- -ACCG---CCCGUCGCG-CGaGUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 8822 0.67 0.822121
Target:  5'- gGGCaGGCGGCGCGCcCAAc------ -3'
miRNA:   3'- aCCGcCCGUCGCGCGaGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 10459 0.81 0.164894
Target:  5'- cGGCGcGGCGGCGCGCUCA-GUGa--- -3'
miRNA:   3'- aCCGC-CCGUCGCGCGAGUuCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 22913 0.67 0.839531
Target:  5'- uUGGuCGGGCAGCGcCGCUUuaauGUc---- -3'
miRNA:   3'- -ACC-GCCCGUCGC-GCGAGuu--CAuauuu -5'
6837 5' -54.9 NC_001875.2 + 23197 0.67 0.822121
Target:  5'- uUGGCGGuuGCAGUa-GCUCAAGUAg--- -3'
miRNA:   3'- -ACCGCC--CGUCGcgCGAGUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 32794 0.68 0.794623
Target:  5'- gGGCGGGCGcCGCGCcggCAAGc----- -3'
miRNA:   3'- aCCGCCCGUcGCGCGa--GUUCauauuu -5'
6837 5' -54.9 NC_001875.2 + 33279 0.7 0.662478
Target:  5'- cGGCGGcaGCAGCGCGUUCuugagcacGGUGUc-- -3'
miRNA:   3'- aCCGCC--CGUCGCGCGAGu-------UCAUAuuu -5'
6837 5' -54.9 NC_001875.2 + 33480 0.69 0.745749
Target:  5'- gUGGCGcGCcGCGCGCUgGGGUGc--- -3'
miRNA:   3'- -ACCGCcCGuCGCGCGAgUUCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 37975 0.67 0.839531
Target:  5'- cGGCGGcCuGCGCGCUCAGc------ -3'
miRNA:   3'- aCCGCCcGuCGCGCGAGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 39125 1.06 0.003497
Target:  5'- cUGGCGGGCAGCGCGCUCAAGUAUAAAa -3'
miRNA:   3'- -ACCGCCCGUCGCGCGAGUUCAUAUUU- -5'
6837 5' -54.9 NC_001875.2 + 39667 0.69 0.755782
Target:  5'- gGGCcGGCGGCGCGCggcggCGAGcUGcUAGAg -3'
miRNA:   3'- aCCGcCCGUCGCGCGa----GUUC-AU-AUUU- -5'
6837 5' -54.9 NC_001875.2 + 42292 0.66 0.893652
Target:  5'- cGGCaGGCuGCGCGUgc--GUAUAGAc -3'
miRNA:   3'- aCCGcCCGuCGCGCGaguuCAUAUUU- -5'
6837 5' -54.9 NC_001875.2 + 42756 0.77 0.303152
Target:  5'- aUGGUGaGCGGCGCGCUCGGGUcgGc- -3'
miRNA:   3'- -ACCGCcCGUCGCGCGAGUUCAuaUuu -5'
6837 5' -54.9 NC_001875.2 + 47773 0.68 0.77548
Target:  5'- aGGCGGGCgaaaccaacaugAGCaCGCUCAGGa----- -3'
miRNA:   3'- aCCGCCCG------------UCGcGCGAGUUCauauuu -5'
6837 5' -54.9 NC_001875.2 + 52512 0.67 0.834391
Target:  5'- cGGCGccaaaGGCAGCgccGCGCUCAucgaaagcacgcgccAGUAUGc- -3'
miRNA:   3'- aCCGC-----CCGUCG---CGCGAGU---------------UCAUAUuu -5'
6837 5' -54.9 NC_001875.2 + 57697 0.66 0.87184
Target:  5'- cGGCGGGCGccGCGCcCUCGAa------ -3'
miRNA:   3'- aCCGCCCGU--CGCGcGAGUUcauauuu -5'
6837 5' -54.9 NC_001875.2 + 58038 0.66 0.864096
Target:  5'- -cGUGGGCGGCGCGCUg--------- -3'
miRNA:   3'- acCGCCCGUCGCGCGAguucauauuu -5'
6837 5' -54.9 NC_001875.2 + 62823 0.67 0.830924
Target:  5'- cUGGUcgGGGCAGCGCGCcacCAcGUGc--- -3'
miRNA:   3'- -ACCG--CCCGUCGCGCGa--GUuCAUauuu -5'
6837 5' -54.9 NC_001875.2 + 63731 0.69 0.715047
Target:  5'- cGGCGGGCgcuucgccGGCGuCGCUCAuGU-UAAAu -3'
miRNA:   3'- aCCGCCCG--------UCGC-GCGAGUuCAuAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.