Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 52512 | 0.67 | 0.834391 |
Target: 5'- cGGCGccaaaGGCAGCgccGCGCUCAucgaaagcacgcgccAGUAUGc- -3' miRNA: 3'- aCCGC-----CCGUCG---CGCGAGU---------------UCAUAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 90461 | 0.68 | 0.765696 |
Target: 5'- cGGUGGGCGGCGCGUa---------- -3' miRNA: 3'- aCCGCCCGUCGCGCGaguucauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 47773 | 0.68 | 0.77548 |
Target: 5'- aGGCGGGCgaaaccaacaugAGCaCGCUCAGGa----- -3' miRNA: 3'- aCCGCCCG------------UCGcGCGAGUUCauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 84411 | 0.68 | 0.785126 |
Target: 5'- cGGC-GGCGGCGCGUaUAGGUGc--- -3' miRNA: 3'- aCCGcCCGUCGCGCGaGUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 32794 | 0.68 | 0.794623 |
Target: 5'- gGGCGGGCGcCGCGCcggCAAGc----- -3' miRNA: 3'- aCCGCCCGUcGCGCGa--GUUCauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 117741 | 0.67 | 0.819443 |
Target: 5'- uUGGUGuuGGCAGCGCGUUCGucacaucuaauauaAGUGa--- -3' miRNA: 3'- -ACCGC--CCGUCGCGCGAGU--------------UCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 8822 | 0.67 | 0.822121 |
Target: 5'- gGGCaGGCGGCGCGCcCAAc------ -3' miRNA: 3'- aCCGcCCGUCGCGCGaGUUcauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 79131 | 0.67 | 0.822121 |
Target: 5'- cGGCGGGCgccgcGGCGgGCUCGu------- -3' miRNA: 3'- aCCGCCCG-----UCGCgCGAGUucauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 84989 | 0.67 | 0.830924 |
Target: 5'- gUGGUGGGCauuuccagcAGCGUGCgCAAcGUGUGc- -3' miRNA: 3'- -ACCGCCCG---------UCGCGCGaGUU-CAUAUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 74372 | 0.68 | 0.765696 |
Target: 5'- gUGcGCGGccGCGGCGCGUUCAGGc----- -3' miRNA: 3'- -AC-CGCC--CGUCGCGCGAGUUCauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 80922 | 0.68 | 0.765696 |
Target: 5'- uUGaCGGGCGGCGCuucguugguGCUCAAGUu---- -3' miRNA: 3'- -ACcGCCCGUCGCG---------CGAGUUCAuauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 39667 | 0.69 | 0.755782 |
Target: 5'- gGGCcGGCGGCGCGCggcggCGAGcUGcUAGAg -3' miRNA: 3'- aCCGcCCGUCGCGCGa----GUUC-AU-AUUU- -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 42756 | 0.77 | 0.303152 |
Target: 5'- aUGGUGaGCGGCGCGCUCGGGUcgGc- -3' miRNA: 3'- -ACCGCcCGUCGCGCGAGUUCAuaUuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 118321 | 0.71 | 0.598607 |
Target: 5'- cGGCcGGCcGCGCGCUgCAGGUgAUGAAc -3' miRNA: 3'- aCCGcCCGuCGCGCGA-GUUCA-UAUUU- -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 65775 | 0.71 | 0.641195 |
Target: 5'- cGGCGGGCGGCGgCGCgUCGucguUGAGc -3' miRNA: 3'- aCCGCCCGUCGC-GCG-AGUucauAUUU- -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 80618 | 0.7 | 0.673084 |
Target: 5'- cGGUGGGCGcgcggaacGCGCGCUCGAc------ -3' miRNA: 3'- aCCGCCCGU--------CGCGCGAGUUcauauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 63731 | 0.69 | 0.715047 |
Target: 5'- cGGCGGGCgcuucgccGGCGuCGCUCAuGU-UAAAu -3' miRNA: 3'- aCCGCCCG--------UCGC-GCGAGUuCAuAUUU- -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 84348 | 0.69 | 0.73561 |
Target: 5'- gUGGCGGaGCGGCuGCGCcggUAGGUGc--- -3' miRNA: 3'- -ACCGCC-CGUCG-CGCGa--GUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 5923 | 0.69 | 0.745749 |
Target: 5'- aUGGCguuGGGUAGCGCcGCgCAGGUGg--- -3' miRNA: 3'- -ACCG---CCCGUCGCG-CGaGUUCAUauuu -5' |
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6837 | 5' | -54.9 | NC_001875.2 | + | 33480 | 0.69 | 0.745749 |
Target: 5'- gUGGCGcGCcGCGCGCUgGGGUGc--- -3' miRNA: 3'- -ACCGCcCGuCGCGCGAgUUCAUauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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