miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 5' -56 NC_001875.2 + 90359 0.66 0.860967
Target:  5'- cGGccgGCGCagaccacacaaGACAcGCCGCGCGCgCCGc -3'
miRNA:   3'- -CCaaaCGCGg----------UUGU-CGGUGUGCG-GGC- -5'
6842 5' -56 NC_001875.2 + 11941 0.66 0.883079
Target:  5'- ----cGCGCCGACuGUgCGCGCGaCCGg -3'
miRNA:   3'- ccaaaCGCGGUUGuCG-GUGUGCgGGC- -5'
6842 5' -56 NC_001875.2 + 99397 0.66 0.883079
Target:  5'- cGGcg-GCGCCAGCgGGUCGCGCaGCgCa -3'
miRNA:   3'- -CCaaaCGCGGUUG-UCGGUGUG-CGgGc -5'
6842 5' -56 NC_001875.2 + 30838 0.66 0.860967
Target:  5'- aGGUugUUGCGCaaAACcGCCGCaaACGCCgCGg -3'
miRNA:   3'- -CCA--AACGCGg-UUGuCGGUG--UGCGG-GC- -5'
6842 5' -56 NC_001875.2 + 48520 0.66 0.875928
Target:  5'- ----cGCGCCGcCcGgCGCGCGCCCc -3'
miRNA:   3'- ccaaaCGCGGUuGuCgGUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 42751 0.66 0.868555
Target:  5'- ----cGCGCaugGugAGCgGCGCGCUCGg -3'
miRNA:   3'- ccaaaCGCGg--UugUCGgUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 39662 0.66 0.868555
Target:  5'- aGUUUGgGCCGGCGGC-GCGCGgCgGc -3'
miRNA:   3'- cCAAACgCGGUUGUCGgUGUGCgGgC- -5'
6842 5' -56 NC_001875.2 + 65801 0.66 0.860967
Target:  5'- ----aGCGCCAGCuugAGCggaauguacucCACGCGCUCGu -3'
miRNA:   3'- ccaaaCGCGGUUG---UCG-----------GUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 10360 0.66 0.883079
Target:  5'- --aUUGCGCCG--GGCUACG-GCCUGg -3'
miRNA:   3'- ccaAACGCGGUugUCGGUGUgCGGGC- -5'
6842 5' -56 NC_001875.2 + 52513 0.66 0.860967
Target:  5'- ----gGCGCCAaagGCAGCgC-CGCGCUCa -3'
miRNA:   3'- ccaaaCGCGGU---UGUCG-GuGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 23478 0.66 0.860196
Target:  5'- aGUUUGCGUUGACcguguugGGCCACgucggGCGCUCa -3'
miRNA:   3'- cCAAACGCGGUUG-------UCGGUG-----UGCGGGc -5'
6842 5' -56 NC_001875.2 + 33496 0.66 0.875928
Target:  5'- uGGggUGCGCCAACcGauuguaCACGCaGCgCGg -3'
miRNA:   3'- -CCaaACGCGGUUGuCg-----GUGUG-CGgGC- -5'
6842 5' -56 NC_001875.2 + 25906 0.66 0.860967
Target:  5'- gGGUUU-CGgCAaaGCGGCCA-AUGCCCGa -3'
miRNA:   3'- -CCAAAcGCgGU--UGUCGGUgUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 13824 0.66 0.860967
Target:  5'- uGGUg-GUGCaacauGCAGuCCACACGUCUGa -3'
miRNA:   3'- -CCAaaCGCGgu---UGUC-GGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 128467 0.66 0.883079
Target:  5'- ----cGCGCCuccauauCAGCCGCGCGUUa- -3'
miRNA:   3'- ccaaaCGCGGuu-----GUCGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 66479 0.66 0.896698
Target:  5'- cGUUUGCGCCcaccacgcuuAAgAGCUACaagucGCGCCUc -3'
miRNA:   3'- cCAAACGCGG----------UUgUCGGUG-----UGCGGGc -5'
6842 5' -56 NC_001875.2 + 49642 0.66 0.883079
Target:  5'- ----gGCGaCAcgaGCGGCCGCcgGCGCCCa -3'
miRNA:   3'- ccaaaCGCgGU---UGUCGGUG--UGCGGGc -5'
6842 5' -56 NC_001875.2 + 49851 0.66 0.860967
Target:  5'- -uUUUGCGCgc-CGGCCGgCGCGCCUu -3'
miRNA:   3'- ccAAACGCGguuGUCGGU-GUGCGGGc -5'
6842 5' -56 NC_001875.2 + 61501 0.66 0.860967
Target:  5'- ----cGCGCCGGCucggcGCCGCA-GUCCGc -3'
miRNA:   3'- ccaaaCGCGGUUGu----CGGUGUgCGGGC- -5'
6842 5' -56 NC_001875.2 + 80618 0.66 0.860967
Target:  5'- cGGUggGCGC--GCGGaaCGCGCGCUCGa -3'
miRNA:   3'- -CCAaaCGCGguUGUCg-GUGUGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.