miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 5' -56 NC_001875.2 + 318 0.7 0.696043
Target:  5'- -cUUUGCGCCGcuucCAGCCGCugcaccGCGCgCCGc -3'
miRNA:   3'- ccAAACGCGGUu---GUCGGUG------UGCG-GGC- -5'
6842 5' -56 NC_001875.2 + 2759 0.7 0.696043
Target:  5'- ----gGCGCCAGCGGCUGCu--CCCGg -3'
miRNA:   3'- ccaaaCGCGGUUGUCGGUGugcGGGC- -5'
6842 5' -56 NC_001875.2 + 3063 0.67 0.845166
Target:  5'- ----gGCGC--GCAGCgGCGCGCCgGg -3'
miRNA:   3'- ccaaaCGCGguUGUCGgUGUGCGGgC- -5'
6842 5' -56 NC_001875.2 + 3176 0.68 0.793294
Target:  5'- aGGUga--GCCGGCGGCCGCGCaCCa- -3'
miRNA:   3'- -CCAaacgCGGUUGUCGGUGUGcGGgc -5'
6842 5' -56 NC_001875.2 + 4553 0.85 0.103944
Target:  5'- cGGUUUGggggcCGCCAgcaacgcgaGCAGCCGCAUGCCCGa -3'
miRNA:   3'- -CCAAAC-----GCGGU---------UGUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 5288 0.71 0.624152
Target:  5'- ---aUG-GCCGACGuGCC-CGCGCCCGa -3'
miRNA:   3'- ccaaACgCGGUUGU-CGGuGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 6220 0.74 0.436901
Target:  5'- --aUUGCGuCCGuCGGCgACACGCCCa -3'
miRNA:   3'- ccaAACGC-GGUuGUCGgUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 6505 0.7 0.66538
Target:  5'- ----cGCGCCAACacgcuGGCCGC-CGUCCa -3'
miRNA:   3'- ccaaaCGCGGUUG-----UCGGUGuGCGGGc -5'
6842 5' -56 NC_001875.2 + 7110 0.67 0.853168
Target:  5'- ----cGCugGCCGACAuugaccGCCACGCGCCg- -3'
miRNA:   3'- ccaaaCG--CGGUUGU------CGGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 7254 0.67 0.853168
Target:  5'- ----cGCGCugCAGCGGCCugGCGCgggucgCCGa -3'
miRNA:   3'- ccaaaCGCG--GUUGUCGGugUGCG------GGC- -5'
6842 5' -56 NC_001875.2 + 8301 0.68 0.765249
Target:  5'- ---aUGCacgGCCAGCAGCggguugggUGCACGCCCu -3'
miRNA:   3'- ccaaACG---CGGUUGUCG--------GUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 8816 0.66 0.890004
Target:  5'- cGGgUUGgGCa---GGCgGCGCGCCCa -3'
miRNA:   3'- -CCaAACgCGguugUCGgUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 9059 0.68 0.77473
Target:  5'- cGGUUUccGCGCCggUuuccGCCAacuGCGCCUGu -3'
miRNA:   3'- -CCAAA--CGCGGuuGu---CGGUg--UGCGGGC- -5'
6842 5' -56 NC_001875.2 + 9709 0.73 0.512651
Target:  5'- cGUgcGCGCCGGCcGCgC-CGCGCCCGa -3'
miRNA:   3'- cCAaaCGCGGUUGuCG-GuGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 10360 0.66 0.883079
Target:  5'- --aUUGCGCCG--GGCUACG-GCCUGg -3'
miRNA:   3'- ccaAACGCGGUugUCGGUGUgCGGGC- -5'
6842 5' -56 NC_001875.2 + 11772 0.66 0.890004
Target:  5'- cGUcauCGCCAACcucGCgGCGCGCCUGa -3'
miRNA:   3'- cCAaacGCGGUUGu--CGgUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 11941 0.66 0.883079
Target:  5'- ----cGCGCCGACuGUgCGCGCGaCCGg -3'
miRNA:   3'- ccaaaCGCGGUUGuCG-GUGUGCgGGC- -5'
6842 5' -56 NC_001875.2 + 12291 0.69 0.725221
Target:  5'- cGUgUGCaGCCGGCAcgccGCCgugugcguggucaACGCGCCCGg -3'
miRNA:   3'- cCAaACG-CGGUUGU----CGG-------------UGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 12422 0.67 0.836137
Target:  5'- ----cGCGCCAAgcaGGCCguugcguGCGCGCCgCGg -3'
miRNA:   3'- ccaaaCGCGGUUg--UCGG-------UGUGCGG-GC- -5'
6842 5' -56 NC_001875.2 + 13553 0.67 0.82001
Target:  5'- ----cGCGCCAgcuGCAGCCACucuUGCgUGg -3'
miRNA:   3'- ccaaaCGCGGU---UGUCGGUGu--GCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.