miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 5' -56 NC_001875.2 + 34072 1.11 0.001878
Target:  5'- cGGUUUGCGCCAACAGCCACACGCCCGu -3'
miRNA:   3'- -CCAAACGCGGUUGUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 4553 0.85 0.103944
Target:  5'- cGGUUUGggggcCGCCAgcaacgcgaGCAGCCGCAUGCCCGa -3'
miRNA:   3'- -CCAAAC-----GCGGU---------UGUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 54568 0.81 0.184072
Target:  5'- ---cUGCGCCGcgGCGGCCGCuuCGCCCGg -3'
miRNA:   3'- ccaaACGCGGU--UGUCGGUGu-GCGGGC- -5'
6842 5' -56 NC_001875.2 + 68710 0.8 0.208683
Target:  5'- ---gUGCGCC---GGCCGCGCGCCCGg -3'
miRNA:   3'- ccaaACGCGGuugUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 27092 0.79 0.236083
Target:  5'- uGUcgGCGCCGAC-GCC-CACGCCCGu -3'
miRNA:   3'- cCAaaCGCGGUUGuCGGuGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 36820 0.78 0.266437
Target:  5'- ----cGCGCCGcgGCAGUUGCGCGCCCGc -3'
miRNA:   3'- ccaaaCGCGGU--UGUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 37348 0.78 0.286122
Target:  5'- -cUUUGCGC--GCGGCCGCGCGCUCGu -3'
miRNA:   3'- ccAAACGCGguUGUCGGUGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 45467 0.78 0.286122
Target:  5'- ----gGCGCCcGCAGCCGCGCGUCUa -3'
miRNA:   3'- ccaaaCGCGGuUGUCGGUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 93955 0.77 0.299871
Target:  5'- ----cGCGCCAGCaAGCCGCugGCgCGg -3'
miRNA:   3'- ccaaaCGCGGUUG-UCGGUGugCGgGC- -5'
6842 5' -56 NC_001875.2 + 42945 0.77 0.321444
Target:  5'- uGGcgUGCGUCAGCAGCCcgcgcaGCGCGCCa- -3'
miRNA:   3'- -CCaaACGCGGUUGUCGG------UGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 102039 0.76 0.351978
Target:  5'- -aUUUGuCGCCGGCguAGCCugACACGCCCGu -3'
miRNA:   3'- ccAAAC-GCGGUUG--UCGG--UGUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 77916 0.76 0.359126
Target:  5'- cGUgcGCGCCAACGcGCCcgcaacgGCGCGCCCa -3'
miRNA:   3'- cCAaaCGCGGUUGU-CGG-------UGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 69205 0.76 0.367999
Target:  5'- ----gGCGCCGACGGCCAgUACGCuuGu -3'
miRNA:   3'- ccaaaCGCGGUUGUCGGU-GUGCGggC- -5'
6842 5' -56 NC_001875.2 + 88061 0.76 0.373723
Target:  5'- aGUUUGuCGCCAGCagcgGGCCGCACaacugcgucguguuGCCCGa -3'
miRNA:   3'- cCAAAC-GCGGUUG----UCGGUGUG--------------CGGGC- -5'
6842 5' -56 NC_001875.2 + 18478 0.75 0.392952
Target:  5'- -uUUUGCGCCGcgccgcagcgacGCAGCC--GCGCCCGa -3'
miRNA:   3'- ccAAACGCGGU------------UGUCGGugUGCGGGC- -5'
6842 5' -56 NC_001875.2 + 62471 0.75 0.401511
Target:  5'- cGGUggacgGCGCgCAGCGGgCGCACGCCg- -3'
miRNA:   3'- -CCAaa---CGCG-GUUGUCgGUGUGCGGgc -5'
6842 5' -56 NC_001875.2 + 102772 0.75 0.418979
Target:  5'- ----cGCGCCGugGCAGCaACACGCCCc -3'
miRNA:   3'- ccaaaCGCGGU--UGUCGgUGUGCGGGc -5'
6842 5' -56 NC_001875.2 + 122752 0.75 0.418979
Target:  5'- gGGUUaGCGCCGACucGCCACAgGCgCa -3'
miRNA:   3'- -CCAAaCGCGGUUGu-CGGUGUgCGgGc -5'
6842 5' -56 NC_001875.2 + 54327 0.75 0.427885
Target:  5'- cGGUcgUGCGCgUGACGGUCACgucguuggacGCGCCCGg -3'
miRNA:   3'- -CCAa-ACGCG-GUUGUCGGUG----------UGCGGGC- -5'
6842 5' -56 NC_001875.2 + 6220 0.74 0.436901
Target:  5'- --aUUGCGuCCGuCGGCgACACGCCCa -3'
miRNA:   3'- ccaAACGC-GGUuGUCGgUGUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.