miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 3' -57.4 NC_001875.2 + 31670 1.06 0.002436
Target:  5'- cUUUUCAUGCCGCUCGCGCCCACCGUGa -3'
miRNA:   3'- -AAAAGUACGGCGAGCGCGGGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 39228 0.82 0.118921
Target:  5'- ---gCAaGCCGCUCGCGCCCACCa-- -3'
miRNA:   3'- aaaaGUaCGGCGAGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 51220 0.77 0.231741
Target:  5'- --gUCGaGCgCGCguuccgCGCGCCCACCGUGa -3'
miRNA:   3'- aaaAGUaCG-GCGa-----GCGCGGGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 66473 0.74 0.3547
Target:  5'- ---cCAaGCCGUUUGCGCCCACCa-- -3'
miRNA:   3'- aaaaGUaCGGCGAGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 31700 0.74 0.3547
Target:  5'- ------cGCCGCUUGCGCgCCGCCGg- -3'
miRNA:   3'- aaaaguaCGGCGAGCGCG-GGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 99346 0.73 0.40478
Target:  5'- --gUCGUGuCCGCgcaacuugggCGCGCCCGCCaaGUGg -3'
miRNA:   3'- aaaAGUAC-GGCGa---------GCGCGGGUGG--CAC- -5'
6847 3' -57.4 NC_001875.2 + 27361 0.72 0.431437
Target:  5'- --aUCAUGCgGCUCaccagcacguuGCGCCCGCUGg- -3'
miRNA:   3'- aaaAGUACGgCGAG-----------CGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 42534 0.72 0.46852
Target:  5'- --gUCGUGCCGCUCGacaucUCCACgGUGg -3'
miRNA:   3'- aaaAGUACGGCGAGCgc---GGGUGgCAC- -5'
6847 3' -57.4 NC_001875.2 + 18229 0.71 0.487665
Target:  5'- --cUCuUGCCGC-CGCgGCCCGCCGc- -3'
miRNA:   3'- aaaAGuACGGCGaGCG-CGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 130947 0.71 0.507171
Target:  5'- -gUUCGUgGCCGacugcgccguuCUCGCGCCCAaaGUGg -3'
miRNA:   3'- aaAAGUA-CGGC-----------GAGCGCGGGUggCAC- -5'
6847 3' -57.4 NC_001875.2 + 78404 0.71 0.517048
Target:  5'- ----aGUGCUGCaCGCGCUgGCCGUGu -3'
miRNA:   3'- aaaagUACGGCGaGCGCGGgUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 93962 0.7 0.537025
Target:  5'- ---gCAaGCCGCUggCGCgGCCCGCCGUu -3'
miRNA:   3'- aaaaGUaCGGCGA--GCG-CGGGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 102411 0.7 0.547114
Target:  5'- ---aCGUGUCgGCgUCGCGCUCGCCGUu -3'
miRNA:   3'- aaaaGUACGG-CG-AGCGCGGGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 81353 0.7 0.588
Target:  5'- --cUgGUGCCGCgcgcaCGCGCCgGCCGc- -3'
miRNA:   3'- aaaAgUACGGCGa----GCGCGGgUGGCac -5'
6847 3' -57.4 NC_001875.2 + 25935 0.7 0.588
Target:  5'- uUUUUCGUGguggCGC-CGCGCCCGCCa-- -3'
miRNA:   3'- -AAAAGUACg---GCGaGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 65731 0.69 0.598321
Target:  5'- ------cGCCGcCUCGcCGCCCGCCGc- -3'
miRNA:   3'- aaaaguaCGGC-GAGC-GCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 52718 0.69 0.608668
Target:  5'- ------cGCCGCg-GCGCCCGCCGc- -3'
miRNA:   3'- aaaaguaCGGCGagCGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 92177 0.69 0.629408
Target:  5'- ------cGCCGC-CGCGCgCCGCCGg- -3'
miRNA:   3'- aaaaguaCGGCGaGCGCG-GGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 96358 0.69 0.629408
Target:  5'- --gUCAUGCCGCUCaCGgCCAauGUGu -3'
miRNA:   3'- aaaAGUACGGCGAGcGCgGGUggCAC- -5'
6847 3' -57.4 NC_001875.2 + 9716 0.69 0.629408
Target:  5'- ---gCcgGCCGCgcCGCGCCCGaagCGUGg -3'
miRNA:   3'- aaaaGuaCGGCGa-GCGCGGGUg--GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.