miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 3' -57.4 NC_001875.2 + 2286 0.66 0.816688
Target:  5'- ------cGUCGUgaugCGCGCgCGCCGUGg -3'
miRNA:   3'- aaaaguaCGGCGa---GCGCGgGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 2906 0.68 0.691404
Target:  5'- ------aGCCGCUCGUGCCuauuCACCGc- -3'
miRNA:   3'- aaaaguaCGGCGAGCGCGG----GUGGCac -5'
6847 3' -57.4 NC_001875.2 + 7486 0.68 0.659477
Target:  5'- --cUCAUGCCGCUCauuuggcugaucgGCGCCgUGCUGUu -3'
miRNA:   3'- aaaAGUACGGCGAG-------------CGCGG-GUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 9716 0.69 0.629408
Target:  5'- ---gCcgGCCGCgcCGCGCCCGaagCGUGg -3'
miRNA:   3'- aaaaGuaCGGCGa-GCGCGGGUg--GCAC- -5'
6847 3' -57.4 NC_001875.2 + 12390 0.66 0.789631
Target:  5'- ----gGUGCCGCUCGuCGUcgggCCGCUGUu -3'
miRNA:   3'- aaaagUACGGCGAGC-GCG----GGUGGCAc -5'
6847 3' -57.4 NC_001875.2 + 18229 0.71 0.487665
Target:  5'- --cUCuUGCCGC-CGCgGCCCGCCGc- -3'
miRNA:   3'- aaaAGuACGGCGaGCG-CGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 25935 0.7 0.588
Target:  5'- uUUUUCGUGguggCGC-CGCGCCCGCCa-- -3'
miRNA:   3'- -AAAAGUACg---GCGaGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 27361 0.72 0.431437
Target:  5'- --aUCAUGCgGCUCaccagcacguuGCGCCCGCUGg- -3'
miRNA:   3'- aaaAGUACGgCGAG-----------CGCGGGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 30095 0.67 0.721838
Target:  5'- cUUUguUGCUGUgCGCGCUguaCGCCGUGa -3'
miRNA:   3'- aAAAguACGGCGaGCGCGG---GUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 31670 1.06 0.002436
Target:  5'- cUUUUCAUGCCGCUCGCGCCCACCGUGa -3'
miRNA:   3'- -AAAAGUACGGCGAGCGCGGGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 31700 0.74 0.3547
Target:  5'- ------cGCCGCUUGCGCgCCGCCGg- -3'
miRNA:   3'- aaaaguaCGGCGAGCGCG-GGUGGCac -5'
6847 3' -57.4 NC_001875.2 + 36126 0.68 0.701612
Target:  5'- --cUCAUGCacuuCGCguuucagCGCGCCCgaGCCGUa -3'
miRNA:   3'- aaaAGUACG----GCGa------GCGCGGG--UGGCAc -5'
6847 3' -57.4 NC_001875.2 + 39228 0.82 0.118921
Target:  5'- ---gCAaGCCGCUCGCGCCCACCa-- -3'
miRNA:   3'- aaaaGUaCGGCGAGCGCGGGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 39367 0.66 0.789631
Target:  5'- ------cGCCGuCUCGUGCCUACCcUGc -3'
miRNA:   3'- aaaaguaCGGC-GAGCGCGGGUGGcAC- -5'
6847 3' -57.4 NC_001875.2 + 42534 0.72 0.46852
Target:  5'- --gUCGUGCCGCUCGacaucUCCACgGUGg -3'
miRNA:   3'- aaaAGUACGGCGAGCgc---GGGUGgCAC- -5'
6847 3' -57.4 NC_001875.2 + 46558 0.67 0.741748
Target:  5'- ------cGCCGCcCGCGCaaACCGUGu -3'
miRNA:   3'- aaaaguaCGGCGaGCGCGggUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 50937 0.68 0.691404
Target:  5'- uUUUUCAggcGCCGCUCGCGCgacuugcucugCCACUc-- -3'
miRNA:   3'- -AAAAGUa--CGGCGAGCGCG-----------GGUGGcac -5'
6847 3' -57.4 NC_001875.2 + 51220 0.77 0.231741
Target:  5'- --gUCGaGCgCGCguuccgCGCGCCCACCGUGa -3'
miRNA:   3'- aaaAGUaCG-GCGa-----GCGCGGGUGGCAC- -5'
6847 3' -57.4 NC_001875.2 + 51962 0.67 0.71176
Target:  5'- ---aCGUGCCGCaCGCGCgCG-CGUGg -3'
miRNA:   3'- aaaaGUACGGCGaGCGCGgGUgGCAC- -5'
6847 3' -57.4 NC_001875.2 + 52718 0.69 0.608668
Target:  5'- ------cGCCGCg-GCGCCCGCCGc- -3'
miRNA:   3'- aaaaguaCGGCGagCGCGGGUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.