Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6847 | 3' | -57.4 | NC_001875.2 | + | 39367 | 0.66 | 0.789631 |
Target: 5'- ------cGCCGuCUCGUGCCUACCcUGc -3' miRNA: 3'- aaaaguaCGGC-GAGCGCGGGUGGcAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 61876 | 0.67 | 0.71176 |
Target: 5'- ---aCGUGuuGgUCGCGUuuUCGCCGUGg -3' miRNA: 3'- aaaaGUACggCgAGCGCG--GGUGGCAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 51962 | 0.67 | 0.71176 |
Target: 5'- ---aCGUGCCGCaCGCGCgCG-CGUGg -3' miRNA: 3'- aaaaGUACGGCGaGCGCGgGUgGCAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 30095 | 0.67 | 0.721838 |
Target: 5'- cUUUguUGCUGUgCGCGCUguaCGCCGUGa -3' miRNA: 3'- aAAAguACGGCGaGCGCGG---GUGGCAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 62590 | 0.67 | 0.731837 |
Target: 5'- --cUCGaGCCGCggcccagCGCGCCguucgacgcCGCCGUGu -3' miRNA: 3'- aaaAGUaCGGCGa------GCGCGG---------GUGGCAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 124865 | 0.67 | 0.75156 |
Target: 5'- ---aCcgGCCGCUUugGCGCCCugCa-- -3' miRNA: 3'- aaaaGuaCGGCGAG--CGCGGGugGcac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 74693 | 0.66 | 0.780309 |
Target: 5'- uUUUUCGacccGCCGUUgGCGCCCACg--- -3' miRNA: 3'- -AAAAGUa---CGGCGAgCGCGGGUGgcac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 122244 | 0.66 | 0.780309 |
Target: 5'- ---gCGUcGuuGCaCGCGCCCACCGc- -3' miRNA: 3'- aaaaGUA-CggCGaGCGCGGGUGGCac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 12390 | 0.66 | 0.789631 |
Target: 5'- ----gGUGCCGCUCGuCGUcgggCCGCUGUu -3' miRNA: 3'- aaaagUACGGCGAGC-GCG----GGUGGCAc -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 129030 | 0.68 | 0.691404 |
Target: 5'- ---aCGUcGCCGCgcUCGCGCUCGCCa-- -3' miRNA: 3'- aaaaGUA-CGGCG--AGCGCGGGUGGcac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 114285 | 0.68 | 0.691404 |
Target: 5'- ------aGCCGCUCGCGCCaACgGUu -3' miRNA: 3'- aaaaguaCGGCGAGCGCGGgUGgCAc -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 50937 | 0.68 | 0.691404 |
Target: 5'- uUUUUCAggcGCCGCUCGCGCgacuugcucugCCACUc-- -3' miRNA: 3'- -AAAAGUa--CGGCGAGCGCG-----------GGUGGcac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 99346 | 0.73 | 0.40478 |
Target: 5'- --gUCGUGuCCGCgcaacuugggCGCGCCCGCCaaGUGg -3' miRNA: 3'- aaaAGUAC-GGCGa---------GCGCGGGUGG--CAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 27361 | 0.72 | 0.431437 |
Target: 5'- --aUCAUGCgGCUCaccagcacguuGCGCCCGCUGg- -3' miRNA: 3'- aaaAGUACGgCGAG-----------CGCGGGUGGCac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 42534 | 0.72 | 0.46852 |
Target: 5'- --gUCGUGCCGCUCGacaucUCCACgGUGg -3' miRNA: 3'- aaaAGUACGGCGAGCgc---GGGUGgCAC- -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 102411 | 0.7 | 0.547114 |
Target: 5'- ---aCGUGUCgGCgUCGCGCUCGCCGUu -3' miRNA: 3'- aaaaGUACGG-CG-AGCGCGGGUGGCAc -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 25935 | 0.7 | 0.588 |
Target: 5'- uUUUUCGUGguggCGC-CGCGCCCGCCa-- -3' miRNA: 3'- -AAAAGUACg---GCGaGCGCGGGUGGcac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 81353 | 0.7 | 0.588 |
Target: 5'- --cUgGUGCCGCgcgcaCGCGCCgGCCGc- -3' miRNA: 3'- aaaAgUACGGCGa----GCGCGGgUGGCac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 65731 | 0.69 | 0.598321 |
Target: 5'- ------cGCCGcCUCGcCGCCCGCCGc- -3' miRNA: 3'- aaaaguaCGGC-GAGC-GCGGGUGGCac -5' |
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6847 | 3' | -57.4 | NC_001875.2 | + | 96358 | 0.69 | 0.629408 |
Target: 5'- --gUCAUGCCGCUCaCGgCCAauGUGu -3' miRNA: 3'- aaaAGUACGGCGAGcGCgGGUggCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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