miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 21858 1.05 0.004167
Target:  5'- cACCGACCGCGCGUACGUGGCAAACUUg -3'
miRNA:   3'- -UGGCUGGCGCGCAUGCACCGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 61956 0.75 0.420573
Target:  5'- gUCGACCgGCGCGccuagAUGUGGCAAACa- -3'
miRNA:   3'- uGGCUGG-CGCGCa----UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 89262 0.73 0.48594
Target:  5'- aGCUGACgCGCGCGUGCGccgaccUGGCGcGGCUg -3'
miRNA:   3'- -UGGCUG-GCGCGCAUGC------ACCGU-UUGAa -5'
6853 3' -55.7 NC_001875.2 + 123631 0.72 0.545568
Target:  5'- gUCGACUGCGcCGUgaACGUGGCAAAg-- -3'
miRNA:   3'- uGGCUGGCGC-GCA--UGCACCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 9715 0.72 0.545568
Target:  5'- cGCCGGCCGCGCcgcgcccgaaGCGUGGCAcGugUUg -3'
miRNA:   3'- -UGGCUGGCGCGca--------UGCACCGU-UugAA- -5'
6853 3' -55.7 NC_001875.2 + 12298 0.72 0.545568
Target:  5'- aGCCGgcacGCCGcCGUGUGCGUGGUcAACg- -3'
miRNA:   3'- -UGGC----UGGC-GCGCAUGCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 392 0.71 0.586603
Target:  5'- -aUGACCGCGCGUAguUGUGGCGGc--- -3'
miRNA:   3'- ugGCUGGCGCGCAU--GCACCGUUugaa -5'
6853 3' -55.7 NC_001875.2 + 39668 0.71 0.61776
Target:  5'- gGCCGGCgGCGCGcgGC--GGCGAGCUg -3'
miRNA:   3'- -UGGCUGgCGCGCa-UGcaCCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 67154 0.71 0.6386
Target:  5'- gGCUGuCUGCGCGggacaGCGUGGUGGACa- -3'
miRNA:   3'- -UGGCuGGCGCGCa----UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 19965 0.71 0.642768
Target:  5'- uCCGGCCgGCGCcucgccguugcugacGUGCGUGGcCAGACa- -3'
miRNA:   3'- uGGCUGG-CGCG---------------CAUGCACC-GUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 102908 0.7 0.649016
Target:  5'- gGCCGGCCGUugaaGCGgAgGUGGCGGAUg- -3'
miRNA:   3'- -UGGCUGGCG----CGCaUgCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 12376 0.7 0.649016
Target:  5'- cGuuGGCCGaCGCGUucucuuCGaUGGCAAACUUg -3'
miRNA:   3'- -UggCUGGC-GCGCAu-----GC-ACCGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 29273 0.7 0.669799
Target:  5'- cGCCGACCGCGCcgGCGgGGCGc---- -3'
miRNA:   3'- -UGGCUGGCGCGcaUGCaCCGUuugaa -5'
6853 3' -55.7 NC_001875.2 + 112709 0.69 0.721036
Target:  5'- cGCUGACgGCGCcgcCGUGGUAGGCg- -3'
miRNA:   3'- -UGGCUGgCGCGcauGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 50483 0.69 0.721036
Target:  5'- gACgCGGCCgGCGCGUGCGcgcGGCAccAGCg- -3'
miRNA:   3'- -UG-GCUGG-CGCGCAUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 62285 0.69 0.721036
Target:  5'- uAUCGGCCauuaaCGCGUugGUGGCcAACg- -3'
miRNA:   3'- -UGGCUGGc----GCGCAugCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 8775 0.69 0.731085
Target:  5'- gACCaGcCCGUGC-UugGUGGCAAACa- -3'
miRNA:   3'- -UGG-CuGGCGCGcAugCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 80652 0.69 0.741045
Target:  5'- cGCCaGaACCGCGcCGU-CGUgGGCAAACUg -3'
miRNA:   3'- -UGG-C-UGGCGC-GCAuGCA-CCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 16253 0.69 0.741045
Target:  5'- gGCCGuCaCGCGCGUGCGUcacguggugcccGGCGAccGCa- -3'
miRNA:   3'- -UGGCuG-GCGCGCAUGCA------------CCGUU--UGaa -5'
6853 3' -55.7 NC_001875.2 + 1285 0.69 0.741045
Target:  5'- cGCUG-UUGCGCGUcgACGUGGUGAACg- -3'
miRNA:   3'- -UGGCuGGCGCGCA--UGCACCGUUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.