miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 392 0.71 0.586603
Target:  5'- -aUGACCGCGCGUAguUGUGGCGGc--- -3'
miRNA:   3'- ugGCUGGCGCGCAU--GCACCGUUugaa -5'
6853 3' -55.7 NC_001875.2 + 1072 0.67 0.816363
Target:  5'- -gCGACCGCGCGgucagGCucaacaGGCAAGCg- -3'
miRNA:   3'- ugGCUGGCGCGCa----UGca----CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 1285 0.69 0.741045
Target:  5'- cGCUG-UUGCGCGUcgACGUGGUGAACg- -3'
miRNA:   3'- -UGGCuGGCGCGCA--UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 8775 0.69 0.731085
Target:  5'- gACCaGcCCGUGC-UugGUGGCAAACa- -3'
miRNA:   3'- -UGG-CuGGCGCGcAugCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 9636 0.68 0.798393
Target:  5'- -gCGugCGCGCGccgUGCGUGuuucGCGAGCUUu -3'
miRNA:   3'- ugGCugGCGCGC---AUGCAC----CGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 9715 0.72 0.545568
Target:  5'- cGCCGGCCGCGCcgcgcccgaaGCGUGGCAcGugUUg -3'
miRNA:   3'- -UGGCUGGCGCGca--------UGCACCGU-UugAA- -5'
6853 3' -55.7 NC_001875.2 + 10634 0.66 0.880677
Target:  5'- gGCCGguGCCGCccaGCGUGCaGUacuugggcGGCGGACUg -3'
miRNA:   3'- -UGGC--UGGCG---CGCAUG-CA--------CCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 11943 0.67 0.841996
Target:  5'- cGCCGACUGUGCGcGCGaccGGCGGcGCg- -3'
miRNA:   3'- -UGGCUGGCGCGCaUGCa--CCGUU-UGaa -5'
6853 3' -55.7 NC_001875.2 + 12298 0.72 0.545568
Target:  5'- aGCCGgcacGCCGcCGUGUGCGUGGUcAACg- -3'
miRNA:   3'- -UGGC----UGGC-GCGCAUGCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 12376 0.7 0.649016
Target:  5'- cGuuGGCCGaCGCGUucucuuCGaUGGCAAACUUg -3'
miRNA:   3'- -UggCUGGC-GCGCAu-----GC-ACCGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 16253 0.69 0.741045
Target:  5'- gGCCGuCaCGCGCGUGCGUcacguggugcccGGCGAccGCa- -3'
miRNA:   3'- -UGGCuG-GCGCGCAUGCA------------CCGUU--UGaa -5'
6853 3' -55.7 NC_001875.2 + 19965 0.71 0.642768
Target:  5'- uCCGGCCgGCGCcucgccguugcugacGUGCGUGGcCAGACa- -3'
miRNA:   3'- uGGCUGG-CGCG---------------CAUGCACC-GUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 21858 1.05 0.004167
Target:  5'- cACCGACCGCGCGUACGUGGCAAACUUg -3'
miRNA:   3'- -UGGCUGGCGCGCAUGCACCGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 22597 0.66 0.890512
Target:  5'- gGCCGGCCG-GCuGUACGguuucgugucucugGGCAuGCUa -3'
miRNA:   3'- -UGGCUGGCgCG-CAUGCa-------------CCGUuUGAa -5'
6853 3' -55.7 NC_001875.2 + 29273 0.7 0.669799
Target:  5'- cGCCGACCGCGCcgGCGgGGCGc---- -3'
miRNA:   3'- -UGGCUGGCGCGcaUGCaCCGUuugaa -5'
6853 3' -55.7 NC_001875.2 + 29782 0.66 0.873377
Target:  5'- -aCGGCCGCGgGUggacggGCGUGuCAGGCUa -3'
miRNA:   3'- ugGCUGGCGCgCA------UGCACcGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 30200 0.66 0.887748
Target:  5'- cGCCGuucGCCGCGaCGgccguUGUGGCGAccACUUu -3'
miRNA:   3'- -UGGC---UGGCGC-GCau---GCACCGUU--UGAA- -5'
6853 3' -55.7 NC_001875.2 + 31257 0.66 0.85811
Target:  5'- cCCGGCC-CGCGUACGcgucgacGCAGACg- -3'
miRNA:   3'- uGGCUGGcGCGCAUGCac-----CGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 33048 0.66 0.887052
Target:  5'- cGCCGcGCCGCGCGgauaGCGUuccgcgcGGCuccAGACUUu -3'
miRNA:   3'- -UGGC-UGGCGCGCa---UGCA-------CCG---UUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 35523 0.66 0.865853
Target:  5'- -gCGGCCGCGCGUuauauACGcGGCuuAUUg -3'
miRNA:   3'- ugGCUGGCGCGCA-----UGCaCCGuuUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.