miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 118322 0.67 0.825092
Target:  5'- gGCCGGCCGCGCGcUGCa-GGUgauGAACc- -3'
miRNA:   3'- -UGGCUGGCGCGC-AUGcaCCG---UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 71908 0.68 0.760659
Target:  5'- cGCCcACUGgGCGUGCGcgucGGCGAGCg- -3'
miRNA:   3'- -UGGcUGGCgCGCAUGCa---CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 111907 0.68 0.760659
Target:  5'- cGCCGGCCGCuccGUGUACG-GGCcgguGCa- -3'
miRNA:   3'- -UGGCUGGCG---CGCAUGCaCCGuu--UGaa -5'
6853 3' -55.7 NC_001875.2 + 68713 0.68 0.770293
Target:  5'- cGCCGGCCGCGCGccCGgccgcuaucccaUGGaCGAGCg- -3'
miRNA:   3'- -UGGCUGGCGCGCauGC------------ACC-GUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 65739 0.68 0.7798
Target:  5'- cGCCGcccGCCGCGCGggccucgGCGUauucgugcgcGGCGGGCg- -3'
miRNA:   3'- -UGGC---UGGCGCGCa------UGCA----------CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 85354 0.68 0.78917
Target:  5'- cGCCGacGCCGUggcgGCGUucGCGuUGGCAAACg- -3'
miRNA:   3'- -UGGC--UGGCG----CGCA--UGC-ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 38279 0.68 0.798393
Target:  5'- cUCGcAgCGCGCGUACGacgacgcggUGGCGAGCg- -3'
miRNA:   3'- uGGC-UgGCGCGCAUGC---------ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 37353 0.68 0.798393
Target:  5'- cGCgCGGCCGCGCGcuCGUG-CGAACg- -3'
miRNA:   3'- -UG-GCUGGCGCGCauGCACcGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 1072 0.67 0.816363
Target:  5'- -gCGACCGCGCGgucagGCucaacaGGCAAGCg- -3'
miRNA:   3'- ugGCUGGCGCGCa----UGca----CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 98870 0.69 0.750906
Target:  5'- cACCGugCGCGuCGUaaacacggGCGacaUGGCGAGCg- -3'
miRNA:   3'- -UGGCugGCGC-GCA--------UGC---ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 80652 0.69 0.741045
Target:  5'- cGCCaGaACCGCGcCGU-CGUgGGCAAACUg -3'
miRNA:   3'- -UGG-C-UGGCGC-GCAuGCA-CCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 16253 0.69 0.741045
Target:  5'- gGCCGuCaCGCGCGUGCGUcacguggugcccGGCGAccGCa- -3'
miRNA:   3'- -UGGCuG-GCGCGCAUGCA------------CCGUU--UGaa -5'
6853 3' -55.7 NC_001875.2 + 12298 0.72 0.545568
Target:  5'- aGCCGgcacGCCGcCGUGUGCGUGGUcAACg- -3'
miRNA:   3'- -UGGC----UGGC-GCGCAUGCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 392 0.71 0.586603
Target:  5'- -aUGACCGCGCGUAguUGUGGCGGc--- -3'
miRNA:   3'- ugGCUGGCGCGCAU--GCACCGUUugaa -5'
6853 3' -55.7 NC_001875.2 + 39668 0.71 0.61776
Target:  5'- gGCCGGCgGCGCGcgGC--GGCGAGCUg -3'
miRNA:   3'- -UGGCUGgCGCGCa-UGcaCCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 67154 0.71 0.6386
Target:  5'- gGCUGuCUGCGCGggacaGCGUGGUGGACa- -3'
miRNA:   3'- -UGGCuGGCGCGCa----UGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 29273 0.7 0.669799
Target:  5'- cGCCGACCGCGCcgGCGgGGCGc---- -3'
miRNA:   3'- -UGGCUGGCGCGcaUGCaCCGUuugaa -5'
6853 3' -55.7 NC_001875.2 + 62285 0.69 0.721036
Target:  5'- uAUCGGCCauuaaCGCGUugGUGGCcAACg- -3'
miRNA:   3'- -UGGCUGGc----GCGCAugCACCGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 8775 0.69 0.731085
Target:  5'- gACCaGcCCGUGC-UugGUGGCAAACa- -3'
miRNA:   3'- -UGG-CuGGCGCGcAugCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 1285 0.69 0.741045
Target:  5'- cGCUG-UUGCGCGUcgACGUGGUGAACg- -3'
miRNA:   3'- -UGGCuGGCGCGCA--UGCACCGUUUGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.