miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 5' -57.9 NC_001875.2 + 85835 0.66 0.819435
Target:  5'- -aGCACGUCGUGCaccGCguugUUGUGGUGc -3'
miRNA:   3'- caUGUGCAGCGCGa--CGa---GGCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 63249 0.66 0.819435
Target:  5'- -aACGCGUCGgGCUcggcggccagcgGCgccaCGCGGUGc -3'
miRNA:   3'- caUGUGCAGCgCGA------------CGag--GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 86141 0.66 0.817719
Target:  5'- aGUGCGCGgcgCGCGCgGCgagaugacggaCGUGGUGc -3'
miRNA:   3'- -CAUGUGCa--GCGCGaCGag---------GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 71919 0.66 0.816858
Target:  5'- cGUGCGCGUCGgcgagcgccuugacCGCgcGCUCCGCGc--- -3'
miRNA:   3'- -CAUGUGCAGC--------------GCGa-CGAGGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 23783 0.66 0.814266
Target:  5'- -cGCACGUugcccaggucgccgaCGUGUcGCUCCGCGGc-- -3'
miRNA:   3'- caUGUGCA---------------GCGCGaCGAGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 121861 0.66 0.810786
Target:  5'- cGUGCACGUaCGCcCUGUacacgaCGUGGUGGc -3'
miRNA:   3'- -CAUGUGCA-GCGcGACGag----GCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 108989 0.66 0.810786
Target:  5'- -gACGCaaucaacucgGUCGCGCaaacGCUUCGCGGcGAa -3'
miRNA:   3'- caUGUG----------CAGCGCGa---CGAGGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 4901 0.66 0.810786
Target:  5'- --uCGCGcCGCaGCUGCUCC-CGGUc- -3'
miRNA:   3'- cauGUGCaGCG-CGACGAGGcGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 6970 0.66 0.810786
Target:  5'- --cCACGgCGCGCUGCUUgacaGCGGg-- -3'
miRNA:   3'- cauGUGCaGCGCGACGAGg---CGCCacu -5'
6853 5' -57.9 NC_001875.2 + 42686 0.66 0.810786
Target:  5'- cGUGCACGaaacCGCGCgGCg-CGCGGUu- -3'
miRNA:   3'- -CAUGUGCa---GCGCGaCGagGCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 42586 0.66 0.801976
Target:  5'- -cGCACG-CGCGCgucaGCUCgGCGcUGGg -3'
miRNA:   3'- caUGUGCaGCGCGa---CGAGgCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 40652 0.66 0.801976
Target:  5'- -cGCACG-CGCcgGCUGUUgCGCGGcGAc -3'
miRNA:   3'- caUGUGCaGCG--CGACGAgGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 124911 0.66 0.801976
Target:  5'- -cGCACGaCGCGUUGCUCaCGUacguguuggucaGGUGc -3'
miRNA:   3'- caUGUGCaGCGCGACGAG-GCG------------CCACu -5'
6853 5' -57.9 NC_001875.2 + 64760 0.66 0.801976
Target:  5'- uUGCGCGcguagaucUCGCGCgccaGCUCCaGCGGcuUGGu -3'
miRNA:   3'- cAUGUGC--------AGCGCGa---CGAGG-CGCC--ACU- -5'
6853 5' -57.9 NC_001875.2 + 72666 0.66 0.792109
Target:  5'- cGUACuCGUugucuuucUGUGCcaucaccagguuuUGCUCCGCGGUGc -3'
miRNA:   3'- -CAUGuGCA--------GCGCG-------------ACGAGGCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 69235 0.66 0.787566
Target:  5'- -gACACGgcggcgucgaacggCGCGCUGggCCGCGGcucGAg -3'
miRNA:   3'- caUGUGCa-------------GCGCGACgaGGCGCCa--CU- -5'
6853 5' -57.9 NC_001875.2 + 17058 0.67 0.765297
Target:  5'- -aACGCGa-GCaGCUGC-CCGCuGGUGAa -3'
miRNA:   3'- caUGUGCagCG-CGACGaGGCG-CCACU- -5'
6853 5' -57.9 NC_001875.2 + 43862 0.67 0.765297
Target:  5'- -cGgGCGUCGCGUacgcggGCgUuuGCGGUGGc -3'
miRNA:   3'- caUgUGCAGCGCGa-----CG-AggCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 57582 0.67 0.765297
Target:  5'- -cGCgGCGUCGCGCUGUccagaagCGUGGUGu -3'
miRNA:   3'- caUG-UGCAGCGCGACGag-----GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 100977 0.67 0.765297
Target:  5'- -aGCGCc-CGCGCUGCaggCCGCGGc-- -3'
miRNA:   3'- caUGUGcaGCGCGACGa--GGCGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.