miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 5' -57.9 NC_001875.2 + 124911 0.66 0.801976
Target:  5'- -cGCACGaCGCGUUGCUCaCGUacguguuggucaGGUGc -3'
miRNA:   3'- caUGUGCaGCGCGACGAG-GCG------------CCACu -5'
6853 5' -57.9 NC_001875.2 + 121861 0.66 0.810786
Target:  5'- cGUGCACGUaCGCcCUGUacacgaCGUGGUGGc -3'
miRNA:   3'- -CAUGUGCA-GCGcGACGag----GCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 113090 0.73 0.39685
Target:  5'- -cGCGCGUCaGCGCcuuaGCcgCCGUGGUGAg -3'
miRNA:   3'- caUGUGCAG-CGCGa---CGa-GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 111799 0.71 0.535231
Target:  5'- gGUGCACGcggccgacggCGCcugGCUGCUCCGCG-UGAc -3'
miRNA:   3'- -CAUGUGCa---------GCG---CGACGAGGCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 110271 0.72 0.440516
Target:  5'- cGUACGCGuccacgcuaauaUCGCGCgGC-CCGCGGUa- -3'
miRNA:   3'- -CAUGUGC------------AGCGCGaCGaGGCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 108989 0.66 0.810786
Target:  5'- -gACGCaaucaacucgGUCGCGCaaacGCUUCGCGGcGAa -3'
miRNA:   3'- caUGUG----------CAGCGCGa---CGAGGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 100977 0.67 0.765297
Target:  5'- -aGCGCc-CGCGCUGCaggCCGCGGc-- -3'
miRNA:   3'- caUGUGcaGCGCGACGa--GGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 100127 0.69 0.653439
Target:  5'- uUACAUGcUgGCGCUGUUugugucugccgcugUCGCGGUGAu -3'
miRNA:   3'- cAUGUGC-AgCGCGACGA--------------GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 93042 0.69 0.615731
Target:  5'- uGUACACGUaCGUGC-GCUUuuucuggcccaUGCGGUGGa -3'
miRNA:   3'- -CAUGUGCA-GCGCGaCGAG-----------GCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 91682 0.68 0.706939
Target:  5'- aUGCGCaUCGCGUUGCcggCCguGCGGUGc -3'
miRNA:   3'- cAUGUGcAGCGCGACGa--GG--CGCCACu -5'
6853 5' -57.9 NC_001875.2 + 89365 0.69 0.64631
Target:  5'- cGUGCGCGUgCGCGUguUGCUgCGUGGc-- -3'
miRNA:   3'- -CAUGUGCA-GCGCG--ACGAgGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 86141 0.66 0.817719
Target:  5'- aGUGCGCGgcgCGCGCgGCgagaugacggaCGUGGUGc -3'
miRNA:   3'- -CAUGUGCa--GCGCGaCGag---------GCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 85835 0.66 0.819435
Target:  5'- -aGCACGUCGUGCaccGCguugUUGUGGUGc -3'
miRNA:   3'- caUGUGCAGCGCGa--CGa---GGCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 85149 0.67 0.736523
Target:  5'- --cCACGUCGCGCaccuugaacucGCUCgaCGUGGUGGu -3'
miRNA:   3'- cauGUGCAGCGCGa----------CGAG--GCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 74110 0.69 0.625922
Target:  5'- cUACGCGcCGCGC-GaCUuuGCGGUGu -3'
miRNA:   3'- cAUGUGCaGCGCGaC-GAggCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 73133 0.67 0.746216
Target:  5'- uUGCGCGUCGCGCUGUaCaCGCu---- -3'
miRNA:   3'- cAUGUGCAGCGCGACGaG-GCGccacu -5'
6853 5' -57.9 NC_001875.2 + 72666 0.66 0.792109
Target:  5'- cGUACuCGUugucuuucUGUGCcaucaccagguuuUGCUCCGCGGUGc -3'
miRNA:   3'- -CAUGuGCA--------GCGCG-------------ACGAGGCGCCACu -5'
6853 5' -57.9 NC_001875.2 + 71919 0.66 0.816858
Target:  5'- cGUGCGCGUCGgcgagcgccuugacCGCgcGCUCCGCGc--- -3'
miRNA:   3'- -CAUGUGCAGC--------------GCGa-CGAGGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 69235 0.66 0.787566
Target:  5'- -gACACGgcggcgucgaacggCGCGCUGggCCGCGGcucGAg -3'
miRNA:   3'- caUGUGCa-------------GCGCGACgaGGCGCCa--CU- -5'
6853 5' -57.9 NC_001875.2 + 65784 0.68 0.686886
Target:  5'- -aGCACG-CGCGCgGCgucggCgCGCGGUGc -3'
miRNA:   3'- caUGUGCaGCGCGaCGa----G-GCGCCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.