Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6859 | 5' | -53.8 | NC_001875.2 | + | 17093 | 1.08 | 0.004582 |
Target: 5'- gCACCCGAAAAGCACGGUCGUCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUGCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130137 | 1.02 | 0.012671 |
Target: 5'- gCACCCGAAAAGCAgGGUCGUCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130269 | 1.02 | 0.012671 |
Target: 5'- gCACCCGAAAAGCAgGGUCGUCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130203 | 1.02 | 0.012671 |
Target: 5'- gCACCCGAAAAGCAgGGUCGUCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 17159 | 1.01 | 0.015005 |
Target: 5'- gCACCCGAAAAGCACGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUGCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130011 | 0.98 | 0.021026 |
Target: 5'- aCACCCGAAAAGCAgGGUCGUUGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130077 | 0.94 | 0.037824 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAg -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130497 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130401 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 129945 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101623 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101557 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101425 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101359 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101293 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101227 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101161 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 101491 | 0.94 | 0.041114 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130335 | 0.9 | 0.071372 |
Target: 5'- gCACCCaAAAGGCAgGGUCGUCGCUGAc -3' miRNA: 3'- -GUGGGcUUUUCGUgCCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 130563 | 0.82 | 0.238968 |
Target: 5'- gCACCCGAAAAGCAgGGUCGcCGaUGAc -3' miRNA: 3'- -GUGGGCUUUUCGUgCCAGCaGCgACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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