miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 5' -53.8 NC_001875.2 + 3429 0.72 0.696991
Target:  5'- -uCCC-AAGAGCGCuGGUCGUCGCa-- -3'
miRNA:   3'- guGGGcUUUUCGUG-CCAGCAGCGacu -5'
6859 5' -53.8 NC_001875.2 + 17093 1.08 0.004582
Target:  5'- gCACCCGAAAAGCACGGUCGUCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUGCCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 17159 1.01 0.015005
Target:  5'- gCACCCGAAAAGCACGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUGCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 21685 0.68 0.892344
Target:  5'- cCGCCCGAcGAGCGCGacgCGgUGCUGc -3'
miRNA:   3'- -GUGGGCUuUUCGUGCca-GCaGCGACu -5'
6859 5' -53.8 NC_001875.2 + 22577 0.67 0.911683
Target:  5'- aCGCCCG---GGCGCGG-CG-CGUUGGc -3'
miRNA:   3'- -GUGGGCuuuUCGUGCCaGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 29281 0.67 0.919954
Target:  5'- gCGCCgGcgGGGCGCGGUCGUguggcgugucgugcgCGUUGu -3'
miRNA:   3'- -GUGGgCuuUUCGUGCCAGCA---------------GCGACu -5'
6859 5' -53.8 NC_001875.2 + 44352 0.67 0.928811
Target:  5'- aGCUCGAucGGGCAgCGGUCG-CGCUu- -3'
miRNA:   3'- gUGGGCUu-UUCGU-GCCAGCaGCGAcu -5'
6859 5' -53.8 NC_001875.2 + 44641 0.69 0.863263
Target:  5'- uCACCUGu---GCGCGGUCG-CGCg-- -3'
miRNA:   3'- -GUGGGCuuuuCGUGCCAGCaGCGacu -5'
6859 5' -53.8 NC_001875.2 + 48824 0.66 0.952411
Target:  5'- gCACUCGcuGcGCGCGGUCca-GCUGAc -3'
miRNA:   3'- -GUGGGCuuUuCGUGCCAGcagCGACU- -5'
6859 5' -53.8 NC_001875.2 + 50685 0.67 0.911683
Target:  5'- gGCCCGAAAGGCGCcugcuuuGUCaaaagcgaaaagGUCGUUGGu -3'
miRNA:   3'- gUGGGCUUUUCGUGc------CAG------------CAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 55844 0.68 0.905479
Target:  5'- aAgCCGAAcucGCGCaaaagguccgGGUCGUUGCUGAg -3'
miRNA:   3'- gUgGGCUUuu-CGUG----------CCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 57735 0.71 0.757212
Target:  5'- aCACgCGcc-AGCACGG-CGUCGCUGc -3'
miRNA:   3'- -GUGgGCuuuUCGUGCCaGCAGCGACu -5'
6859 5' -53.8 NC_001875.2 + 63944 0.7 0.804328
Target:  5'- cCugCCGAggAAGGCGCuGUCGccgaccgCGCUGAa -3'
miRNA:   3'- -GugGGCU--UUUCGUGcCAGCa------GCGACU- -5'
6859 5' -53.8 NC_001875.2 + 64963 0.68 0.87826
Target:  5'- gCGCCgCGAAuuAGGcCGCGGUCGugcacguagUCGCUGu -3'
miRNA:   3'- -GUGG-GCUU--UUC-GUGCCAGC---------AGCGACu -5'
6859 5' -53.8 NC_001875.2 + 65771 0.67 0.91764
Target:  5'- uGCgCGGcgGGCggcgGCGcGUCGUCGUUGAg -3'
miRNA:   3'- gUGgGCUuuUCG----UGC-CAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 66112 0.66 0.943706
Target:  5'- uGCCCGuguacAGCugGccGUCGUCGCg-- -3'
miRNA:   3'- gUGGGCuuu--UCGugC--CAGCAGCGacu -5'
6859 5' -53.8 NC_001875.2 + 71081 0.7 0.813301
Target:  5'- aCACuuGAAAAGCAUGcagcUGUCGCUGu -3'
miRNA:   3'- -GUGggCUUUUCGUGCca--GCAGCGACu -5'
6859 5' -53.8 NC_001875.2 + 73059 0.66 0.943706
Target:  5'- uCGCgUCGaAAAAGCGCacGUCGUCGUUGGc -3'
miRNA:   3'- -GUG-GGC-UUUUCGUGc-CAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 73346 0.67 0.928811
Target:  5'- -uUUCGAAAcgcAGCGCGGUC-UCGUUGGc -3'
miRNA:   3'- guGGGCUUU---UCGUGCCAGcAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 80398 0.68 0.884005
Target:  5'- -cCCCGAucagcgauuuuAGCACGGcacgaaacUCGUCGUUGGa -3'
miRNA:   3'- guGGGCUuu---------UCGUGCC--------AGCAGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.