miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 5' -53.8 NC_001875.2 + 125082 0.7 0.785903
Target:  5'- aCGCCgCGAAu-GCGCGGcacaUCGUUGCUGc -3'
miRNA:   3'- -GUGG-GCUUuuCGUGCC----AGCAGCGACu -5'
6859 5' -53.8 NC_001875.2 + 101623 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 129945 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130401 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130497 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130335 0.9 0.071372
Target:  5'- gCACCCaAAAGGCAgGGUCGUCGCUGAc -3'
miRNA:   3'- -GUGGGcUUUUCGUgCCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130563 0.82 0.238968
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGaUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCgACU- -5'
6859 5' -53.8 NC_001875.2 + 101094 0.73 0.624288
Target:  5'- gCGCCUauAAAAGCGgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGc-UUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 3429 0.72 0.696991
Target:  5'- -uCCC-AAGAGCGCuGGUCGUCGCa-- -3'
miRNA:   3'- guGGGcUUUUCGUG-CCAGCAGCGacu -5'
6859 5' -53.8 NC_001875.2 + 101557 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101491 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101425 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130203 1.02 0.012671
Target:  5'- gCACCCGAAAAGCAgGGUCGUCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130269 1.02 0.012671
Target:  5'- gCACCCGAAAAGCAgGGUCGUCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130011 0.98 0.021026
Target:  5'- aCACCCGAAAAGCAgGGUCGUUGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCAGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 130077 0.94 0.037824
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAg -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101161 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101227 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101293 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5'
6859 5' -53.8 NC_001875.2 + 101359 0.94 0.041114
Target:  5'- gCACCCGAAAAGCAgGGUCGcCGCUGAc -3'
miRNA:   3'- -GUGGGCUUUUCGUgCCAGCaGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.