miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6878 5' -49.2 NC_001875.2 + 589 1.08 0.011305
Target:  5'- gCGUCGCACAACUGCCGCACUAUAUUAa -3'
miRNA:   3'- -GCAGCGUGUUGACGGCGUGAUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 44544 0.8 0.511174
Target:  5'- gCGUCGCGCGGCgUGCCGgGCUGcAUUGa -3'
miRNA:   3'- -GCAGCGUGUUG-ACGGCgUGAUaUAAU- -5'
6878 5' -49.2 NC_001875.2 + 76531 0.74 0.78846
Target:  5'- cCGUCGCGCGccACUGCCGCGa------- -3'
miRNA:   3'- -GCAGCGUGU--UGACGGCGUgauauaau -5'
6878 5' -49.2 NC_001875.2 + 74027 0.74 0.817064
Target:  5'- gCGgCGCACAagAUUGCCGCGCUAa---- -3'
miRNA:   3'- -GCaGCGUGU--UGACGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 114237 0.73 0.835186
Target:  5'- uCGUCGCugGACgcggGCCGCAgcGUGUa- -3'
miRNA:   3'- -GCAGCGugUUGa---CGGCGUgaUAUAau -5'
6878 5' -49.2 NC_001875.2 + 60152 0.73 0.843934
Target:  5'- cCGUCGUGCAccAC-GCCGCAUUGUGUc- -3'
miRNA:   3'- -GCAGCGUGU--UGaCGGCGUGAUAUAau -5'
6878 5' -49.2 NC_001875.2 + 95021 0.73 0.852461
Target:  5'- gCGggCGCGCAACUGCCGCGg------- -3'
miRNA:   3'- -GCa-GCGUGUUGACGGCGUgauauaau -5'
6878 5' -49.2 NC_001875.2 + 40492 0.72 0.898566
Target:  5'- uGUCGCGCAACgGCaCGCugUAc---- -3'
miRNA:   3'- gCAGCGUGUUGaCG-GCGugAUauaau -5'
6878 5' -49.2 NC_001875.2 + 17275 0.72 0.90535
Target:  5'- aCG-CGCACAAUccGCCGCACUGg---- -3'
miRNA:   3'- -GCaGCGUGUUGa-CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 119950 0.71 0.909939
Target:  5'- cCGuUCGCGCAcaacucuaacacgcGCUGCCGCACa------ -3'
miRNA:   3'- -GC-AGCGUGU--------------UGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 18162 0.71 0.918108
Target:  5'- gCGgcgCGCGCGAC-GCCGcCACUGUGg-- -3'
miRNA:   3'- -GCa--GCGUGUUGaCGGC-GUGAUAUaau -5'
6878 5' -49.2 NC_001875.2 + 88065 0.71 0.918108
Target:  5'- uGUCGCcaGCAGCggGCCGCACa------ -3'
miRNA:   3'- gCAGCG--UGUUGa-CGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 90130 0.71 0.929774
Target:  5'- aCGcCGCGCAGC-GCCGCGCa------ -3'
miRNA:   3'- -GCaGCGUGUUGaCGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 4564 0.71 0.935196
Target:  5'- aCGUCGgcaaGCAAUguUGCCGCGCUGUc--- -3'
miRNA:   3'- -GCAGCg---UGUUG--ACGGCGUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 110180 0.7 0.949828
Target:  5'- gCGUCGCACugcGCUcGuCCGCGCUGg---- -3'
miRNA:   3'- -GCAGCGUGu--UGA-C-GGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 114806 0.7 0.95417
Target:  5'- uGUUGCGCGGCUcCCGCACa------ -3'
miRNA:   3'- gCAGCGUGUUGAcGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 17563 0.7 0.958251
Target:  5'- cCGUuggCGCgaGCGGCUGCCGCACa------ -3'
miRNA:   3'- -GCA---GCG--UGUUGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 8010 0.7 0.958251
Target:  5'- -aUUGCGCAACUGCugguugCGCACUGUuggAUUAu -3'
miRNA:   3'- gcAGCGUGUUGACG------GCGUGAUA---UAAU- -5'
6878 5' -49.2 NC_001875.2 + 17343 0.69 0.961704
Target:  5'- cCGcCGCGCGaccgcgucagaguGCUGCCGCACa------ -3'
miRNA:   3'- -GCaGCGUGU-------------UGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 126844 0.69 0.965649
Target:  5'- aGU-GCACAAgUGCCGCACa------ -3'
miRNA:   3'- gCAgCGUGUUgACGGCGUGauauaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.