miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6878 5' -49.2 NC_001875.2 + 124755 0.68 0.982246
Target:  5'- cCG-CGCACGuaguaGCUGCCGC-CcGUGUUGu -3'
miRNA:   3'- -GCaGCGUGU-----UGACGGCGuGaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 81133 0.69 0.972073
Target:  5'- aGUCGC-CGGcCUGCaCGCAC-AUGUUGg -3'
miRNA:   3'- gCAGCGuGUU-GACG-GCGUGaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 30448 0.69 0.974938
Target:  5'- --aCGCGCAGCUGgCGCGCg------ -3'
miRNA:   3'- gcaGCGUGUUGACgGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 7395 0.68 0.977583
Target:  5'- gGUUGCGCGACgcgGUCGCAaaacAUAUUGg -3'
miRNA:   3'- gCAGCGUGUUGa--CGGCGUga--UAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 49952 0.68 0.977583
Target:  5'- gGUCGuCGgAGCUGCgCGCGCUGc---- -3'
miRNA:   3'- gCAGC-GUgUUGACG-GCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 99411 0.68 0.977835
Target:  5'- gGUCGCGCAGCgcauuguuggccagcGCCGCGau-UAUUAg -3'
miRNA:   3'- gCAGCGUGUUGa--------------CGGCGUgauAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 98801 0.68 0.980016
Target:  5'- -aUCGCGCGGCgcggcgcccGCCGCGCUGc---- -3'
miRNA:   3'- gcAGCGUGUUGa--------CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 52627 0.68 0.982246
Target:  5'- uCGUCGCACAACaaggugcaggugUGCgGCGCg------ -3'
miRNA:   3'- -GCAGCGUGUUG------------ACGgCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 10406 0.68 0.982246
Target:  5'- cCGUgGCGCGGCacccGCUGCACUAc---- -3'
miRNA:   3'- -GCAgCGUGUUGa---CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 77697 0.69 0.971774
Target:  5'- -uUUGCGCGACUGCCGCcguccgcuugcacGCUAg---- -3'
miRNA:   3'- gcAGCGUGUUGACGGCG-------------UGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 91166 0.69 0.968979
Target:  5'- gGUCGCGCAAUUggacggaaugucGCCGCGCa------ -3'
miRNA:   3'- gCAGCGUGUUGA------------CGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 126844 0.69 0.965649
Target:  5'- aGU-GCACAAgUGCCGCACa------ -3'
miRNA:   3'- gCAgCGUGUUgACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 74027 0.74 0.817064
Target:  5'- gCGgCGCACAagAUUGCCGCGCUAa---- -3'
miRNA:   3'- -GCaGCGUGU--UGACGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 114237 0.73 0.835186
Target:  5'- uCGUCGCugGACgcggGCCGCAgcGUGUa- -3'
miRNA:   3'- -GCAGCGugUUGa---CGGCGUgaUAUAau -5'
6878 5' -49.2 NC_001875.2 + 40492 0.72 0.898566
Target:  5'- uGUCGCGCAACgGCaCGCugUAc---- -3'
miRNA:   3'- gCAGCGUGUUGaCG-GCGugAUauaau -5'
6878 5' -49.2 NC_001875.2 + 17275 0.72 0.90535
Target:  5'- aCG-CGCACAAUccGCCGCACUGg---- -3'
miRNA:   3'- -GCaGCGUGUUGa-CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 18162 0.71 0.918108
Target:  5'- gCGgcgCGCGCGAC-GCCGcCACUGUGg-- -3'
miRNA:   3'- -GCa--GCGUGUUGaCGGC-GUGAUAUaau -5'
6878 5' -49.2 NC_001875.2 + 110180 0.7 0.949828
Target:  5'- gCGUCGCACugcGCUcGuCCGCGCUGg---- -3'
miRNA:   3'- -GCAGCGUGu--UGA-C-GGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 8010 0.7 0.958251
Target:  5'- -aUUGCGCAACUGCugguugCGCACUGUuggAUUAu -3'
miRNA:   3'- gcAGCGUGUUGACG------GCGUGAUA---UAAU- -5'
6878 5' -49.2 NC_001875.2 + 17343 0.69 0.961704
Target:  5'- cCGcCGCGCGaccgcgucagaguGCUGCCGCACa------ -3'
miRNA:   3'- -GCaGCGUGU-------------UGACGGCGUGauauaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.