miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6878 5' -49.2 NC_001875.2 + 589 1.08 0.011305
Target:  5'- gCGUCGCACAACUGCCGCACUAUAUUAa -3'
miRNA:   3'- -GCAGCGUGUUGACGGCGUGAUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 4564 0.71 0.935196
Target:  5'- aCGUCGgcaaGCAAUguUGCCGCGCUGUc--- -3'
miRNA:   3'- -GCAGCg---UGUUG--ACGGCGUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 7395 0.68 0.977583
Target:  5'- gGUUGCGCGACgcgGUCGCAaaacAUAUUGg -3'
miRNA:   3'- gCAGCGUGUUGa--CGGCGUga--UAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 8010 0.7 0.958251
Target:  5'- -aUUGCGCAACUGCugguugCGCACUGUuggAUUAu -3'
miRNA:   3'- gcAGCGUGUUGACG------GCGUGAUA---UAAU- -5'
6878 5' -49.2 NC_001875.2 + 10406 0.68 0.982246
Target:  5'- cCGUgGCGCGGCacccGCUGCACUAc---- -3'
miRNA:   3'- -GCAgCGUGUUGa---CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 10879 0.67 0.989343
Target:  5'- gCGUCGgugGC-GCUGCCGCGCaacGUGUUGg -3'
miRNA:   3'- -GCAGCg--UGuUGACGGCGUGa--UAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 13483 0.67 0.989343
Target:  5'- -cUCGUACAGCggGCCGcCGCUGUu--- -3'
miRNA:   3'- gcAGCGUGUUGa-CGGC-GUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 17275 0.72 0.90535
Target:  5'- aCG-CGCACAAUccGCCGCACUGg---- -3'
miRNA:   3'- -GCaGCGUGUUGa-CGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 17343 0.69 0.961704
Target:  5'- cCGcCGCGCGaccgcgucagaguGCUGCCGCACa------ -3'
miRNA:   3'- -GCaGCGUGU-------------UGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 17563 0.7 0.958251
Target:  5'- cCGUuggCGCgaGCGGCUGCCGCACa------ -3'
miRNA:   3'- -GCA---GCG--UGUUGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 18162 0.71 0.918108
Target:  5'- gCGgcgCGCGCGAC-GCCGcCACUGUGg-- -3'
miRNA:   3'- -GCa--GCGUGUUGaCGGC-GUGAUAUaau -5'
6878 5' -49.2 NC_001875.2 + 18285 0.66 0.994003
Target:  5'- gGUCGCACAAg-GCCGCuucgcGCgcuUAUUGg -3'
miRNA:   3'- gCAGCGUGUUgaCGGCG-----UGau-AUAAU- -5'
6878 5' -49.2 NC_001875.2 + 20974 0.66 0.99562
Target:  5'- gCGUCGCaaugcccgcagcGCAACUGCcCGUACg------ -3'
miRNA:   3'- -GCAGCG------------UGUUGACG-GCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 21193 0.68 0.977583
Target:  5'- uCGUCGCGCGGCacgGCCaGCGCcaccagguUGUGUUu -3'
miRNA:   3'- -GCAGCGUGUUGa--CGG-CGUG--------AUAUAAu -5'
6878 5' -49.2 NC_001875.2 + 21549 0.66 0.996284
Target:  5'- --aCGCACGcuuaccGCggGCCGCGCgAUAUUAg -3'
miRNA:   3'- gcaGCGUGU------UGa-CGGCGUGaUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 21821 0.67 0.993031
Target:  5'- uGUCGCGCcacuggucgAGCUGCgCGCGCg------ -3'
miRNA:   3'- gCAGCGUG---------UUGACG-GCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 30448 0.69 0.974938
Target:  5'- --aCGCGCAGCUGgCGCGCg------ -3'
miRNA:   3'- gcaGCGUGUUGACgGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 30748 0.68 0.98614
Target:  5'- aCGU-GCAC-GCUGUCGCugUAUAg-- -3'
miRNA:   3'- -GCAgCGUGuUGACGGCGugAUAUaau -5'
6878 5' -49.2 NC_001875.2 + 31058 0.68 0.977583
Target:  5'- aCGUCGgACAACugUGCCGCucaacCUGUGc-- -3'
miRNA:   3'- -GCAGCgUGUUG--ACGGCGu----GAUAUaau -5'
6878 5' -49.2 NC_001875.2 + 31653 0.69 0.974938
Target:  5'- uGUCGCACAAC-GgCGCGCUu----- -3'
miRNA:   3'- gCAGCGUGUUGaCgGCGUGAuauaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.