miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6880 3' -61.3 NC_001875.2 + 77266 0.66 0.650758
Target:  5'- cGCC-GCCGGGcgaaGCGgcCGcCGCGGCGCa -3'
miRNA:   3'- -UGGuCGGUCUc---CGCa-GCaGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 37096 0.66 0.650758
Target:  5'- cACC-GCCGcguGGGUGUgCGggCGCGGCGCc -3'
miRNA:   3'- -UGGuCGGUc--UCCGCA-GCa-GCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 111825 0.66 0.640737
Target:  5'- aAUCAGC--GAGGCGUUGUUGuUGGCGa -3'
miRNA:   3'- -UGGUCGguCUCCGCAGCAGC-GCCGUg -5'
6880 3' -61.3 NC_001875.2 + 20037 0.66 0.640737
Target:  5'- -gCAGCCAGGcGcCGUCGgcCGCGuGCACc -3'
miRNA:   3'- ugGUCGGUCUcC-GCAGCa-GCGC-CGUG- -5'
6880 3' -61.3 NC_001875.2 + 5532 0.66 0.640737
Target:  5'- cGCCGGCCGccguuGAGGCGcgCGUUaaGGUGCc -3'
miRNA:   3'- -UGGUCGGU-----CUCCGCa-GCAGcgCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 33072 0.66 0.630711
Target:  5'- cGCgCGGCucCAGAcuuugauggcGGCGcCGUCGCGGCu- -3'
miRNA:   3'- -UG-GUCG--GUCU----------CCGCaGCAGCGCCGug -5'
6880 3' -61.3 NC_001875.2 + 11915 0.66 0.630711
Target:  5'- -gCGGCgAGcAGGUGUUuugcgCGCGGCGCg -3'
miRNA:   3'- ugGUCGgUC-UCCGCAGca---GCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 113584 0.66 0.630711
Target:  5'- cGCCauugGGCCAGcacGGCGUUcgaGUCGgCGGCGg -3'
miRNA:   3'- -UGG----UCGGUCu--CCGCAG---CAGC-GCCGUg -5'
6880 3' -61.3 NC_001875.2 + 81478 0.66 0.620685
Target:  5'- -gCGGUCAGuGGCG-CG-CGCGGCcCg -3'
miRNA:   3'- ugGUCGGUCuCCGCaGCaGCGCCGuG- -5'
6880 3' -61.3 NC_001875.2 + 50531 0.66 0.620685
Target:  5'- gACgAGgaGGAGGCGcCGcCgGCGGCGCg -3'
miRNA:   3'- -UGgUCggUCUCCGCaGCaG-CGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 103797 0.66 0.620685
Target:  5'- gACCAGUguuaaaaauCAG-GGCGU--UUGCGGCGCg -3'
miRNA:   3'- -UGGUCG---------GUCuCCGCAgcAGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 57536 0.66 0.620685
Target:  5'- -gUAGCUAGAGcaGCG--GUUGCGGCACg -3'
miRNA:   3'- ugGUCGGUCUC--CGCagCAGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 60489 0.66 0.620685
Target:  5'- uUguGCUAGcgucGGCGUUGUCGgCGGuCACa -3'
miRNA:   3'- uGguCGGUCu---CCGCAGCAGC-GCC-GUG- -5'
6880 3' -61.3 NC_001875.2 + 558 0.66 0.619683
Target:  5'- -gUAGCCGGuGGCGUUGUgcaagucguucaaCGCGucGCACa -3'
miRNA:   3'- ugGUCGGUCuCCGCAGCA-------------GCGC--CGUG- -5'
6880 3' -61.3 NC_001875.2 + 79111 0.66 0.610667
Target:  5'- cUUGGCCAc-GGCGUUGUCGgCGGCGg -3'
miRNA:   3'- uGGUCGGUcuCCGCAGCAGC-GCCGUg -5'
6880 3' -61.3 NC_001875.2 + 63264 0.66 0.600665
Target:  5'- -gCGGCCAGcGGCG-CcaCGCGGUGCg -3'
miRNA:   3'- ugGUCGGUCuCCGCaGcaGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 38545 0.67 0.590686
Target:  5'- aGCUcguGGCCGGGuugcuGCGUCGgCGCGGCGu -3'
miRNA:   3'- -UGG---UCGGUCUc----CGCAGCaGCGCCGUg -5'
6880 3' -61.3 NC_001875.2 + 94327 0.67 0.580735
Target:  5'- uCCAGgCAGGGcGCGUCGUC-C-GCACc -3'
miRNA:   3'- uGGUCgGUCUC-CGCAGCAGcGcCGUG- -5'
6880 3' -61.3 NC_001875.2 + 50228 0.67 0.580735
Target:  5'- -aCAGCCGuuuGGCG-CGgCGCGGCAUc -3'
miRNA:   3'- ugGUCGGUcu-CCGCaGCaGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 12805 0.67 0.578748
Target:  5'- cGCCGGaCCAGucuacguAGGCGUCuUCgaacacaaacccgGCGGCGCc -3'
miRNA:   3'- -UGGUC-GGUC-------UCCGCAGcAG-------------CGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.