miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 3' -65.3 NC_001875.2 + 10373 0.66 0.505357
Target:  5'- aCGGC-CUGGcCGaaaacuuugaaCGCCGCCGC-GCCGu -3'
miRNA:   3'- -GCUGuGGCCaGC-----------GCGGCGGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 49377 0.66 0.523625
Target:  5'- gCGGCGgCGGUacCGUuCCuGCCGCCGCg- -3'
miRNA:   3'- -GCUGUgGCCA--GCGcGG-CGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 100264 0.66 0.505357
Target:  5'- uGugGgCGG-CGCGCaagGaaGCCGCCGg -3'
miRNA:   3'- gCugUgGCCaGCGCGg--CggCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 117349 0.66 0.496326
Target:  5'- gGGCgaACCGG-CGgGCCgGCUGgCCGUCGg -3'
miRNA:   3'- gCUG--UGGCCaGCgCGG-CGGC-GGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 89485 0.66 0.469688
Target:  5'- uGGCGCCc-UCGCGCCGCaaCCGCUu -3'
miRNA:   3'- gCUGUGGccAGCGCGGCGgcGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 61501 0.66 0.487368
Target:  5'- -cGCGCCGGcUCgGCGCCGCaGuCCGCg- -3'
miRNA:   3'- gcUGUGGCC-AG-CGCGGCGgC-GGCGgc -5'
6881 3' -65.3 NC_001875.2 + 25290 0.66 0.487368
Target:  5'- gGGCgACUGGUCGCG-CGCuCGUCGaCCc -3'
miRNA:   3'- gCUG-UGGCCAGCGCgGCG-GCGGC-GGc -5'
6881 3' -65.3 NC_001875.2 + 18150 0.66 0.469688
Target:  5'- uGAguUACUGGUgcggCGCGCgCGaCGCCGCCa -3'
miRNA:   3'- gCU--GUGGCCA----GCGCG-GCgGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 37215 0.66 0.478488
Target:  5'- uGGCGCagCGGUgcaGCaaGCCGCUGCCGCg- -3'
miRNA:   3'- gCUGUG--GCCAg--CG--CGGCGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 19427 0.66 0.487368
Target:  5'- aCGACuACCGcaUUGUGCUGCgGCCGCg- -3'
miRNA:   3'- -GCUG-UGGCc-AGCGCGGCGgCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 124818 0.66 0.487368
Target:  5'- gCGGCGCUaaaGGUcagauaCGCGCCGCCgGCCaGCa- -3'
miRNA:   3'- -GCUGUGG---CCA------GCGCGGCGG-CGG-CGgc -5'
6881 3' -65.3 NC_001875.2 + 54443 0.66 0.487368
Target:  5'- gCGugG-CGGUCGUuaGCCGCggCGCCGCa- -3'
miRNA:   3'- -GCugUgGCCAGCG--CGGCG--GCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 8493 0.66 0.505357
Target:  5'- -cACGCCGG--GCGCCGuCCGUgugggCGCCGc -3'
miRNA:   3'- gcUGUGGCCagCGCGGC-GGCG-----GCGGC- -5'
6881 3' -65.3 NC_001875.2 + 90382 0.66 0.487368
Target:  5'- -cACGCCGcG-CGCGCCGCaacCGgCGCCu -3'
miRNA:   3'- gcUGUGGC-CaGCGCGGCG---GCgGCGGc -5'
6881 3' -65.3 NC_001875.2 + 6484 0.66 0.514458
Target:  5'- aCGGCGCCcaacgcGGagugcCGCGCCaacacgcugGCCGCCGUCc -3'
miRNA:   3'- -GCUGUGG------CCa----GCGCGG---------CGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 12284 0.66 0.487368
Target:  5'- aGGcCACCGuGU-GCaGCCgGCaCGCCGCCGu -3'
miRNA:   3'- gCU-GUGGC-CAgCG-CGG-CG-GCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 5792 0.66 0.51172
Target:  5'- aCGGCauuuGCCGGcUGCGCauaagguaguagacUGCCagcGCCGCCGa -3'
miRNA:   3'- -GCUG----UGGCCaGCGCG--------------GCGG---CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 63727 0.66 0.487368
Target:  5'- gCGACGgCGGgCGCuUCGCCGgCGUCGc -3'
miRNA:   3'- -GCUGUgGCCaGCGcGGCGGCgGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 70103 0.66 0.505357
Target:  5'- uGAC-CCcuUUGCGCCGCaGCCgGCCGa -3'
miRNA:   3'- gCUGuGGccAGCGCGGCGgCGG-CGGC- -5'
6881 3' -65.3 NC_001875.2 + 39294 0.66 0.496326
Target:  5'- cCGACACCaaGUgCGCGCUGCacaccguGCCGgCGg -3'
miRNA:   3'- -GCUGUGGc-CA-GCGCGGCGg------CGGCgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.