miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 3' -65.3 NC_001875.2 + 17314 0.73 0.194578
Target:  5'- cCGAUguuaaagagcugcuGgCGGUUGCGCCGCCGCgCGaCCGc -3'
miRNA:   3'- -GCUG--------------UgGCCAGCGCGGCGGCG-GC-GGC- -5'
6881 3' -65.3 NC_001875.2 + 58037 0.75 0.133919
Target:  5'- aCGugGgCGGcgCGCugccguuccaGCCGCCGCCGCCa -3'
miRNA:   3'- -GCugUgGCCa-GCG----------CGGCGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 129166 0.75 0.140212
Target:  5'- aGGCGCCGcaGUUgccccagGCGCCGCCGgCGCCGc -3'
miRNA:   3'- gCUGUGGC--CAG-------CGCGGCGGCgGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 74152 0.75 0.147481
Target:  5'- gGGCG-CGG-CGC-CCGCCGCCGCCa -3'
miRNA:   3'- gCUGUgGCCaGCGcGGCGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 111886 0.73 0.17841
Target:  5'- aGGCGCCGGccggaccgugCGCGCCgGCCGCUccguguacggGCCGg -3'
miRNA:   3'- gCUGUGGCCa---------GCGCGG-CGGCGG----------CGGC- -5'
6881 3' -65.3 NC_001875.2 + 41805 0.73 0.17841
Target:  5'- --cCGCCGGcacgCGCGCCGgCGCCGCgGc -3'
miRNA:   3'- gcuGUGGCCa---GCGCGGCgGCGGCGgC- -5'
6881 3' -65.3 NC_001875.2 + 49856 0.73 0.17841
Target:  5'- -cGCGCCGGccggCGCGCCuuGCCGgCGCCa -3'
miRNA:   3'- gcUGUGGCCa---GCGCGG--CGGCgGCGGc -5'
6881 3' -65.3 NC_001875.2 + 100606 0.73 0.17841
Target:  5'- gGGCGCCGGcCGCgGCCGCUGuUUGCCu -3'
miRNA:   3'- gCUGUGGCCaGCG-CGGCGGC-GGCGGc -5'
6881 3' -65.3 NC_001875.2 + 117925 0.73 0.182659
Target:  5'- aCGGCaagcugcagGCCGG-CGUGCgCGCCGCCGCg- -3'
miRNA:   3'- -GCUG---------UGGCCaGCGCG-GCGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 70216 0.75 0.131986
Target:  5'- gGGCGCCcGagGCGCCGCCgacacagcccgaagcGCCGCCGg -3'
miRNA:   3'- gCUGUGGcCagCGCGGCGG---------------CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 97495 0.76 0.124511
Target:  5'- uGAUACCGGcaaUGUGCCGCUcauagaGCCGCCGg -3'
miRNA:   3'- gCUGUGGCCa--GCGCGGCGG------CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 37583 0.76 0.124511
Target:  5'- -uGCGCCGG-CGCGagCGCCGCgGCCGg -3'
miRNA:   3'- gcUGUGGCCaGCGCg-GCGGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 88236 0.84 0.02894
Target:  5'- aCGGCGCaagCGGcgCGCGCCGCCGCUGCCGc -3'
miRNA:   3'- -GCUGUG---GCCa-GCGCGGCGGCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 98552 0.81 0.050744
Target:  5'- aCGACACCGuGcucaagaaCGCGCUGCUGCCGCCGu -3'
miRNA:   3'- -GCUGUGGC-Ca-------GCGCGGCGGCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 128776 0.81 0.053383
Target:  5'- gCGACcCCGG-CGCGCCGCUGCgCGCCu -3'
miRNA:   3'- -GCUGuGGCCaGCGCGGCGGCG-GCGGc -5'
6881 3' -65.3 NC_001875.2 + 68577 0.81 0.056156
Target:  5'- -cGCACCGcGUgGCGCCGCUgGCCGCCGa -3'
miRNA:   3'- gcUGUGGC-CAgCGCGGCGG-CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 74 0.78 0.079847
Target:  5'- aCGACACCaauGaCGCGCCGCCcgauccGCCGCCGg -3'
miRNA:   3'- -GCUGUGGc--CaGCGCGGCGG------CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 53866 0.78 0.083932
Target:  5'- uGGCACCgucggccuguuGGUCGUGCgGCCGCCGCgGc -3'
miRNA:   3'- gCUGUGG-----------CCAGCGCGgCGGCGGCGgC- -5'
6881 3' -65.3 NC_001875.2 + 66063 0.77 0.095031
Target:  5'- cCGACGCCGcGcgCGUGCuCGCCcaGCCGCCGg -3'
miRNA:   3'- -GCUGUGGC-Ca-GCGCG-GCGG--CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 1875 0.77 0.102343
Target:  5'- cCGcCGCCGc-CGcCGCCGCCGCCGCCa -3'
miRNA:   3'- -GCuGUGGCcaGC-GCGGCGGCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.