miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 3' -65.3 NC_001875.2 + 74 0.78 0.079847
Target:  5'- aCGACACCaauGaCGCGCCGCCcgauccGCCGCCGg -3'
miRNA:   3'- -GCUGUGGc--CaGCGCGGCGG------CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 305 0.72 0.230252
Target:  5'- gGACACgGGcgcgcuUUGCGCCGCUuccaGCCGCUGc -3'
miRNA:   3'- gCUGUGgCC------AGCGCGGCGG----CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 910 0.66 0.514458
Target:  5'- -aACACaCGG-CGCaaaCCGCCGCCacuGCCGu -3'
miRNA:   3'- gcUGUG-GCCaGCGc--GGCGGCGG---CGGC- -5'
6881 3' -65.3 NC_001875.2 + 1728 1.07 0.000656
Target:  5'- gCGACACCGGUCGCGCCGCCGCCGCCGc -3'
miRNA:   3'- -GCUGUGGCCAGCGCGGCGGCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 1772 0.71 0.235548
Target:  5'- uGugACCacgagcauGcCGcCGCCGCCGCCGCCa -3'
miRNA:   3'- gCugUGGc-------CaGC-GCGGCGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 1820 0.71 0.240945
Target:  5'- uGugACCacgaGCauGCCGCCGCCGCCGc -3'
miRNA:   3'- gCugUGGccagCG--CGGCGGCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 1875 0.77 0.102343
Target:  5'- cCGcCGCCGc-CGcCGCCGCCGCCGCCa -3'
miRNA:   3'- -GCuGUGGCcaGC-GCGGCGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 2283 0.67 0.426993
Target:  5'- uGACGUCGuGaugCGCGCgCGCCGUgGCCGc -3'
miRNA:   3'- gCUGUGGC-Ca--GCGCG-GCGGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 3814 0.72 0.205264
Target:  5'- uCGAcCACCGGcCGuCGUCGgCGCaCGCCGg -3'
miRNA:   3'- -GCU-GUGGCCaGC-GCGGCgGCG-GCGGC- -5'
6881 3' -65.3 NC_001875.2 + 5511 0.67 0.443799
Target:  5'- cCGGCGCacg-CGCGCaguuuaCGCCgGCCGCCGu -3'
miRNA:   3'- -GCUGUGgccaGCGCG------GCGG-CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 5792 0.66 0.51172
Target:  5'- aCGGCauuuGCCGGcUGCGCauaagguaguagacUGCCagcGCCGCCGa -3'
miRNA:   3'- -GCUG----UGGCCaGCGCG--------------GCGG---CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 6484 0.66 0.514458
Target:  5'- aCGGCGCCcaacgcGGagugcCGCGCCaacacgcugGCCGCCGUCc -3'
miRNA:   3'- -GCUGUGG------CCa----GCGCGG---------CGGCGGCGGc -5'
6881 3' -65.3 NC_001875.2 + 7566 0.71 0.258335
Target:  5'- aGGCGgCGGgucgucgacgaccaaCGCGCCGCCugucgucauuguGCCGCCGc -3'
miRNA:   3'- gCUGUgGCCa--------------GCGCGGCGG------------CGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 8493 0.66 0.505357
Target:  5'- -cACGCCGG--GCGCCGuCCGUgugggCGCCGc -3'
miRNA:   3'- gcUGUGGCCagCGCGGC-GGCG-----GCGGC- -5'
6881 3' -65.3 NC_001875.2 + 9044 0.71 0.235548
Target:  5'- aGcCGCCGGcCGCGCCGguuuCCGC-GCCGg -3'
miRNA:   3'- gCuGUGGCCaGCGCGGC----GGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 9713 0.67 0.42949
Target:  5'- -cGCGCCGGcCGCGCCGCgcccgaagcguggcaCGuguugagcguccaCCGCCGu -3'
miRNA:   3'- gcUGUGGCCaGCGCGGCG---------------GC-------------GGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 10373 0.66 0.505357
Target:  5'- aCGGC-CUGGcCGaaaacuuugaaCGCCGCCGC-GCCGu -3'
miRNA:   3'- -GCUGuGGCCaGC-----------GCGGCGGCGgCGGC- -5'
6881 3' -65.3 NC_001875.2 + 10872 0.69 0.348968
Target:  5'- gGugGCCGcGUCgGUGgCGCUGCCGCg- -3'
miRNA:   3'- gCugUGGC-CAG-CGCgGCGGCGGCGgc -5'
6881 3' -65.3 NC_001875.2 + 11157 0.69 0.327629
Target:  5'- gGACgGCCGGUCgaugGCGCacagcaGCgCGCCGUCGu -3'
miRNA:   3'- gCUG-UGGCCAG----CGCGg-----CG-GCGGCGGC- -5'
6881 3' -65.3 NC_001875.2 + 12168 0.7 0.287895
Target:  5'- uCGGCugaaGCCGcugUGCGCCGCCGCCgagguuugccugGCCGu -3'
miRNA:   3'- -GCUG----UGGCca-GCGCGGCGGCGG------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.