miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 5' -55.3 NC_001875.2 + 15804 0.66 0.920322
Target:  5'- gGUgGGCGGGUacUGcACCACcaacAGCGUGCc -3'
miRNA:   3'- -CAgCCGCCUAc-AC-UGGUGc---UCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 39670 0.66 0.920322
Target:  5'- -cCGGCGGcgcGcGGCgGCGAGC-UGCu -3'
miRNA:   3'- caGCCGCCua-CaCUGgUGCUCGuACG- -5'
6881 5' -55.3 NC_001875.2 + 121667 0.66 0.920322
Target:  5'- uGUCGGCGGugacgGUGgucucgucggccACCACGccGCGcuUGCg -3'
miRNA:   3'- -CAGCCGCCua---CAC------------UGGUGCu-CGU--ACG- -5'
6881 5' -55.3 NC_001875.2 + 94761 0.66 0.918606
Target:  5'- -gCGGCGGugucGUccgccaaacacagcGUGGCCGCGuccgcgcGCGUGCa -3'
miRNA:   3'- caGCCGCC----UA--------------CACUGGUGCu------CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 102585 0.66 0.914518
Target:  5'- gGUCGGCGGccGcGcACC-CGcAGUAUGCc -3'
miRNA:   3'- -CAGCCGCCuaCaC-UGGuGC-UCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 39818 0.66 0.910309
Target:  5'- cGUCGGCGGccgacuuuggcacgGUGUGcCaCACGcugaucggguauuGCGUGCg -3'
miRNA:   3'- -CAGCCGCC--------------UACACuG-GUGCu------------CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 97066 0.66 0.908469
Target:  5'- cUC-GUGGAUGgcgGACCACGu-CGUGCu -3'
miRNA:   3'- cAGcCGCCUACa--CUGGUGCucGUACG- -5'
6881 5' -55.3 NC_001875.2 + 103021 0.66 0.902179
Target:  5'- -gCuGCGGgcGUGACCACGuGCcccguuUGCc -3'
miRNA:   3'- caGcCGCCuaCACUGGUGCuCGu-----ACG- -5'
6881 5' -55.3 NC_001875.2 + 104970 0.66 0.888885
Target:  5'- -gCGGCGGcgGgcugGugCACG-GCAUcaGCa -3'
miRNA:   3'- caGCCGCCuaCa---CugGUGCuCGUA--CG- -5'
6881 5' -55.3 NC_001875.2 + 82174 0.66 0.888195
Target:  5'- --gGGCGGuacGUGcgcaaccGCCGCGGGCAguacgGCg -3'
miRNA:   3'- cagCCGCCua-CAC-------UGGUGCUCGUa----CG- -5'
6881 5' -55.3 NC_001875.2 + 33590 0.67 0.881175
Target:  5'- aGUCGGCGac-GUGGCgguugaaCACGGGCA-GCa -3'
miRNA:   3'- -CAGCCGCcuaCACUG-------GUGCUCGUaCG- -5'
6881 5' -55.3 NC_001875.2 + 82049 0.67 0.874662
Target:  5'- -gCGGCGGGcugagcggaaUGcUGGCCGgGGGCuuUGCg -3'
miRNA:   3'- caGCCGCCU----------AC-ACUGGUgCUCGu-ACG- -5'
6881 5' -55.3 NC_001875.2 + 12682 0.67 0.874662
Target:  5'- cGUUGGcCGGGUGUGGCggcaaaauguUAUGGGCgacaaaGUGCg -3'
miRNA:   3'- -CAGCC-GCCUACACUG----------GUGCUCG------UACG- -5'
6881 5' -55.3 NC_001875.2 + 94961 0.67 0.872451
Target:  5'- -cCGGCGG-UGUG-CCGCGcGCAcgacgacguucuuuUGCg -3'
miRNA:   3'- caGCCGCCuACACuGGUGCuCGU--------------ACG- -5'
6881 5' -55.3 NC_001875.2 + 101247 0.67 0.859549
Target:  5'- --aGGCGGcgGUGuaaaauUCGUGGGCAUGCu -3'
miRNA:   3'- cagCCGCCuaCACu-----GGUGCUCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 124176 0.67 0.843593
Target:  5'- uGUCGGUccgucgugccguGGAUGUaGAgCGCGucGGCGUGUg -3'
miRNA:   3'- -CAGCCG------------CCUACA-CUgGUGC--UCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 67156 0.67 0.843593
Target:  5'- uUCGGCGGcUGcugGACgagGCGGGCGUGg -3'
miRNA:   3'- cAGCCGCCuACa--CUGg--UGCUCGUACg -5'
6881 5' -55.3 NC_001875.2 + 131545 0.68 0.835315
Target:  5'- -gCGGaCGaGGUGcugGACCugGccAGCAUGCg -3'
miRNA:   3'- caGCC-GC-CUACa--CUGGugC--UCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 117373 0.68 0.826848
Target:  5'- cGUCGG-GGAggcgccgagcuUGcUGGCCGCGGGCuucuuUGCc -3'
miRNA:   3'- -CAGCCgCCU-----------AC-ACUGGUGCUCGu----ACG- -5'
6881 5' -55.3 NC_001875.2 + 47340 0.68 0.818199
Target:  5'- uGUCGGCGGcgGccaaUGACCuaauuGCGUGUg -3'
miRNA:   3'- -CAGCCGCCuaC----ACUGGugcu-CGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.