Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6882 | 5' | -53.7 | NC_001875.2 | + | 42997 | 0.66 | 0.952185 |
Target: 5'- gGCCGUugcgaagguGGCCUCCAuuGCGaGUGcCGcgCg -3' miRNA: 3'- -CGGCG---------UCGGAGGU--UGUaCACuGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 5165 | 0.66 | 0.952185 |
Target: 5'- aGCCGCAacguGCUcgUCAgcGCGUGcaUGGCGGUCa -3' miRNA: 3'- -CGGCGU----CGGa-GGU--UGUAC--ACUGCUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 85484 | 0.66 | 0.952185 |
Target: 5'- aGCUGCGGCCaaauuUCCAucuGCAUGUuuucgucuauuaGACGGc- -3' miRNA: 3'- -CGGCGUCGG-----AGGU---UGUACA------------CUGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 100613 | 0.66 | 0.9479 |
Target: 5'- gGCCGCGGCCgcuguuugCCu-CGUG-GAUGAg- -3' miRNA: 3'- -CGGCGUCGGa-------GGuuGUACaCUGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 66696 | 0.66 | 0.942431 |
Target: 5'- uGCUGCAcgugaccGCCUCCGACAccaUGUacugcacGGCGAg- -3' miRNA: 3'- -CGGCGU-------CGGAGGUUGU---ACA-------CUGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 77497 | 0.66 | 0.938586 |
Target: 5'- cGCCGgGcGCgUCCAACGacGUGACcGUCa -3' miRNA: 3'- -CGGCgU-CGgAGGUUGUa-CACUGcUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 13614 | 0.66 | 0.933553 |
Target: 5'- cGuuGCGaucGUCUCCAAUGUGgcaGGCGGUUg -3' miRNA: 3'- -CggCGU---CGGAGGUUGUACa--CUGCUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 116141 | 0.67 | 0.922727 |
Target: 5'- cGCCGCAGUCa--AACAUG-GGCaGGUCu -3' miRNA: 3'- -CGGCGUCGGaggUUGUACaCUG-CUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 5949 | 0.67 | 0.922727 |
Target: 5'- gGgCGCGGCCUCgCAguACAcGUGAaugUGGUCg -3' miRNA: 3'- -CgGCGUCGGAG-GU--UGUaCACU---GCUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 33227 | 0.67 | 0.916935 |
Target: 5'- -aCGCGGgCUCCGAC--GUGGCGcgCu -3' miRNA: 3'- cgGCGUCgGAGGUUGuaCACUGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 105606 | 0.67 | 0.91089 |
Target: 5'- cGCCGCAGCg-CCAagagcgguugcACGUGUGGUGcgCa -3' miRNA: 3'- -CGGCGUCGgaGGU-----------UGUACACUGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 68589 | 0.67 | 0.91089 |
Target: 5'- cGCCGCuGGCCgccgagcCCGACGcguuugugGUGACGggCg -3' miRNA: 3'- -CGGCG-UCGGa------GGUUGUa-------CACUGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 95202 | 0.67 | 0.91089 |
Target: 5'- -aCGCGGCCaUCUucaagcuCGUGUGccGCGAUCg -3' miRNA: 3'- cgGCGUCGG-AGGuu-----GUACAC--UGCUAG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 10634 | 0.68 | 0.891264 |
Target: 5'- gGCCGguGCCgcCCAGCGUGcaguacuugGGCGGc- -3' miRNA: 3'- -CGGCguCGGa-GGUUGUACa--------CUGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 45611 | 0.68 | 0.891264 |
Target: 5'- gGCgCGCAGCaCUCCAACAccagccgcaaguUGUGcgGCGGc- -3' miRNA: 3'- -CG-GCGUCG-GAGGUUGU------------ACAC--UGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 37597 | 0.68 | 0.890572 |
Target: 5'- cGCCGCGGCCggCCGcacggcgGCGUGcucgccGACGAc- -3' miRNA: 3'- -CGGCGUCGGa-GGU-------UGUACa-----CUGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 54457 | 0.68 | 0.876969 |
Target: 5'- aGCCGCGgcGCCgcaCAGCGUGUG-CGGc- -3' miRNA: 3'- -CGGCGU--CGGag-GUUGUACACuGCUag -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 88265 | 0.68 | 0.876969 |
Target: 5'- aGUCGCucGCCgCCAGCAUGacgcUGGCGggCg -3' miRNA: 3'- -CGGCGu-CGGaGGUUGUAC----ACUGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 102362 | 0.68 | 0.869471 |
Target: 5'- aGCUGCAGUUcgUCCAGCA--UGGCGcgCa -3' miRNA: 3'- -CGGCGUCGG--AGGUUGUacACUGCuaG- -5' |
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6882 | 5' | -53.7 | NC_001875.2 | + | 17604 | 0.68 | 0.869471 |
Target: 5'- cGCUGCGGCCcgcgUCCAGCGac-GACGAc- -3' miRNA: 3'- -CGGCGUCGG----AGGUUGUacaCUGCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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