miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 5' -56.1 NC_001875.2 + 4469 1.09 0.002056
Target:  5'- cUGAGCGCCGUCCGCGCAUGCUUUCAGg -3'
miRNA:   3'- -ACUCGCGGCAGGCGCGUACGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 8498 0.76 0.341914
Target:  5'- cGGGCGCCGUCCGUGUggGCg----- -3'
miRNA:   3'- aCUCGCGGCAGGCGCGuaCGaaaguc -5'
6883 5' -56.1 NC_001875.2 + 16250 0.74 0.43506
Target:  5'- cGAG-GCCGUCaCGCGCGUGCg-UCAc -3'
miRNA:   3'- aCUCgCGGCAG-GCGCGUACGaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 19880 0.73 0.471438
Target:  5'- cGGGCGCCGUUugcgaaaCGCGUgcGCUUUUAGc -3'
miRNA:   3'- aCUCGCGGCAG-------GCGCGuaCGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 99994 0.71 0.571856
Target:  5'- gGAGCGCUGUuaGCGCgGUGCUggUCGc -3'
miRNA:   3'- aCUCGCGGCAggCGCG-UACGAa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 44455 0.71 0.571856
Target:  5'- -aGGCGCCGUCgGCGCAgUGCgccaagUCGu -3'
miRNA:   3'- acUCGCGGCAGgCGCGU-ACGaa----AGUc -5'
6883 5' -56.1 NC_001875.2 + 33044 0.71 0.571856
Target:  5'- cGGGCGCCGcgCCGCGCGgauaGCgUUCc- -3'
miRNA:   3'- aCUCGCGGCa-GGCGCGUa---CGaAAGuc -5'
6883 5' -56.1 NC_001875.2 + 90037 0.71 0.582144
Target:  5'- -cGGCGCCGg-CGCGCGUGCcggCGGa -3'
miRNA:   3'- acUCGCGGCagGCGCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 72086 0.71 0.602825
Target:  5'- uUGGGCGCCGUgguuUCGCGCAaagUGCUg---- -3'
miRNA:   3'- -ACUCGCGGCA----GGCGCGU---ACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 61602 0.71 0.602825
Target:  5'- cGGGCGCCGgCgGCGCuucggGCUgugUCGGc -3'
miRNA:   3'- aCUCGCGGCaGgCGCGua---CGAa--AGUC- -5'
6883 5' -56.1 NC_001875.2 + 79292 0.7 0.644392
Target:  5'- -uGGCGCgCGUgCGCGCAuacuggcgcgUGCUUUCGa -3'
miRNA:   3'- acUCGCG-GCAgGCGCGU----------ACGAAAGUc -5'
6883 5' -56.1 NC_001875.2 + 95740 0.7 0.654779
Target:  5'- -cGGCGCCG-CCGcCGCGUGCUg---- -3'
miRNA:   3'- acUCGCGGCaGGC-GCGUACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 85245 0.7 0.654779
Target:  5'- cGAGCGCgGguUCCGCGCucgGCg--CGGa -3'
miRNA:   3'- aCUCGCGgC--AGGCGCGua-CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 124201 0.7 0.654779
Target:  5'- aGAGCG-CGUCgGCGUGUGUgcgCAGg -3'
miRNA:   3'- aCUCGCgGCAGgCGCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 20043 0.7 0.675489
Target:  5'- -aGGCGCCGUCgGCcGCGUGCa----- -3'
miRNA:   3'- acUCGCGGCAGgCG-CGUACGaaaguc -5'
6883 5' -56.1 NC_001875.2 + 46556 0.7 0.675489
Target:  5'- --cGCGCCGcCCGCGCAaaccGUgUUCGGg -3'
miRNA:   3'- acuCGCGGCaGGCGCGUa---CGaAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 80303 0.69 0.685794
Target:  5'- cGAGCGCCGUCgccaGCGCGUcCgagUCGu -3'
miRNA:   3'- aCUCGCGGCAGg---CGCGUAcGaa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 98925 0.69 0.689904
Target:  5'- -cGGCGCCGgUUGCGCGUGCgcgacgcgcgcgugUUCAGc -3'
miRNA:   3'- acUCGCGGCaGGCGCGUACGa-------------AAGUC- -5'
6883 5' -56.1 NC_001875.2 + 44008 0.69 0.696053
Target:  5'- cGGGCGCCGUgCccaGCGUGCUguaccgCAGc -3'
miRNA:   3'- aCUCGCGGCAgGcg-CGUACGAaa----GUC- -5'
6883 5' -56.1 NC_001875.2 + 30936 0.69 0.72646
Target:  5'- cGAGCGUC-UCCGCGCGcUGCggcgccCGGa -3'
miRNA:   3'- aCUCGCGGcAGGCGCGU-ACGaaa---GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.