miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 5' -56.1 NC_001875.2 + 4469 1.09 0.002056
Target:  5'- cUGAGCGCCGUCCGCGCAUGCUUUCAGg -3'
miRNA:   3'- -ACUCGCGGCAGGCGCGUACGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 6441 0.68 0.764821
Target:  5'- uUGcGCGCCGUCguaguagCGCGCGgUGUUcgUCAGg -3'
miRNA:   3'- -ACuCGCGGCAG-------GCGCGU-ACGAa-AGUC- -5'
6883 5' -56.1 NC_001875.2 + 8072 0.67 0.812107
Target:  5'- uUGAGCG-CGUCCGCGU-UGUUgUCGc -3'
miRNA:   3'- -ACUCGCgGCAGGCGCGuACGAaAGUc -5'
6883 5' -56.1 NC_001875.2 + 8498 0.76 0.341914
Target:  5'- cGGGCGCCGUCCGUGUggGCg----- -3'
miRNA:   3'- aCUCGCGGCAGGCGCGuaCGaaaguc -5'
6883 5' -56.1 NC_001875.2 + 9042 0.68 0.746328
Target:  5'- gGAGcCGCCGgCCGCGCcgGUUUcCGc -3'
miRNA:   3'- aCUC-GCGGCaGGCGCGuaCGAAaGUc -5'
6883 5' -56.1 NC_001875.2 + 16250 0.74 0.43506
Target:  5'- cGAG-GCCGUCaCGCGCGUGCg-UCAc -3'
miRNA:   3'- aCUCgCGGCAG-GCGCGUACGaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 17304 0.66 0.862059
Target:  5'- gUGAGCGCCG-CCGauguuaaagaGC-UGCUggCGGu -3'
miRNA:   3'- -ACUCGCGGCaGGCg---------CGuACGAaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 17339 0.67 0.837951
Target:  5'- --uGCGCCG-CCGCGCGaccGCg-UCAGa -3'
miRNA:   3'- acuCGCGGCaGGCGCGUa--CGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 18569 0.67 0.79402
Target:  5'- uUGAGCGCgcuuugcguCGUUgGCGCcuauUGCgcgUUCAGg -3'
miRNA:   3'- -ACUCGCG---------GCAGgCGCGu---ACGa--AAGUC- -5'
6883 5' -56.1 NC_001875.2 + 19143 0.68 0.765782
Target:  5'- -cGGCGCCGUCaGCGaCAcGUUUUUAGa -3'
miRNA:   3'- acUCGCGGCAGgCGC-GUaCGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 19880 0.73 0.471438
Target:  5'- cGGGCGCCGUUugcgaaaCGCGUgcGCUUUUAGc -3'
miRNA:   3'- aCUCGCGGCAG-------GCGCGuaCGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 20043 0.7 0.675489
Target:  5'- -aGGCGCCGUCgGCcGCGUGCa----- -3'
miRNA:   3'- acUCGCGGCAGgCG-CGUACGaaaguc -5'
6883 5' -56.1 NC_001875.2 + 25991 0.68 0.746328
Target:  5'- gUGAGCagacucguggugGCCGUCgGCGCcuggGCggUCAGc -3'
miRNA:   3'- -ACUCG------------CGGCAGgCGCGua--CGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 29805 0.67 0.820902
Target:  5'- cGGGCGCUGgCgGCGCAUGgg-UCAa -3'
miRNA:   3'- aCUCGCGGCaGgCGCGUACgaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 30936 0.69 0.72646
Target:  5'- cGAGCGUC-UCCGCGCGcUGCggcgccCGGa -3'
miRNA:   3'- aCUCGCGGcAGGCGCGU-ACGaaa---GUC- -5'
6883 5' -56.1 NC_001875.2 + 31706 0.68 0.756112
Target:  5'- uUGcGCGCCGcCgGCGCAUuaCUUUCGGc -3'
miRNA:   3'- -ACuCGCGGCaGgCGCGUAc-GAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 33044 0.71 0.571856
Target:  5'- cGGGCGCCGcgCCGCGCGgauaGCgUUCc- -3'
miRNA:   3'- aCUCGCGGCa-GGCGCGUa---CGaAAGuc -5'
6883 5' -56.1 NC_001875.2 + 37114 0.67 0.79402
Target:  5'- cGGGCGCgGcgCCGCGCcgGCgUUUg- -3'
miRNA:   3'- aCUCGCGgCa-GGCGCGuaCGaAAGuc -5'
6883 5' -56.1 NC_001875.2 + 37593 0.66 0.862059
Target:  5'- cGAGCGCCGcggccggCCGCacggcgGCGUGCUc---- -3'
miRNA:   3'- aCUCGCGGCa------GGCG------CGUACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 40222 0.66 0.84619
Target:  5'- -uGGCGCCGgcgaaaCGCGCGUGUUUa--- -3'
miRNA:   3'- acUCGCGGCag----GCGCGUACGAAaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.