miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 5' -56.1 NC_001875.2 + 71931 0.66 0.84619
Target:  5'- cGAGCGCCuugaCCGCGCGcuccGCgcgCAGc -3'
miRNA:   3'- aCUCGCGGca--GGCGCGUa---CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 19143 0.68 0.765782
Target:  5'- -cGGCGCCGUCaGCGaCAcGUUUUUAGa -3'
miRNA:   3'- acUCGCGGCAGgCGC-GUaCGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 18569 0.67 0.79402
Target:  5'- uUGAGCGCgcuuugcguCGUUgGCGCcuauUGCgcgUUCAGg -3'
miRNA:   3'- -ACUCGCG---------GCAGgCGCGu---ACGa--AAGUC- -5'
6883 5' -56.1 NC_001875.2 + 37114 0.67 0.79402
Target:  5'- cGGGCGCgGcgCCGCGCcgGCgUUUg- -3'
miRNA:   3'- aCUCGCGgCa-GGCGCGuaCGaAAGuc -5'
6883 5' -56.1 NC_001875.2 + 85275 0.67 0.812107
Target:  5'- cGAGCGCCccgaacacgGUuuGCGCggGCggcgCGGg -3'
miRNA:   3'- aCUCGCGG---------CAggCGCGuaCGaaa-GUC- -5'
6883 5' -56.1 NC_001875.2 + 29805 0.67 0.820902
Target:  5'- cGGGCGCUGgCgGCGCAUGgg-UCAa -3'
miRNA:   3'- aCUCGCGGCaGgCGCGUACgaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 98451 0.67 0.820902
Target:  5'- cGAGCGCUa-CCGCGCAaUGCUg---- -3'
miRNA:   3'- aCUCGCGGcaGGCGCGU-ACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 66057 0.67 0.829519
Target:  5'- cGcGCGCCGacgCCGCGCgcGUGCUcgccCAGc -3'
miRNA:   3'- aCuCGCGGCa--GGCGCG--UACGAaa--GUC- -5'
6883 5' -56.1 NC_001875.2 + 17339 0.67 0.837951
Target:  5'- --uGCGCCG-CCGCGCGaccGCg-UCAGa -3'
miRNA:   3'- acuCGCGGCaGGCGCGUa--CGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 6441 0.68 0.764821
Target:  5'- uUGcGCGCCGUCguaguagCGCGCGgUGUUcgUCAGg -3'
miRNA:   3'- -ACuCGCGGCAG-------GCGCGU-ACGAa-AGUC- -5'
6883 5' -56.1 NC_001875.2 + 31706 0.68 0.756112
Target:  5'- uUGcGCGCCGcCgGCGCAUuaCUUUCGGc -3'
miRNA:   3'- -ACuCGCGGCaGgCGCGUAc-GAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 25991 0.68 0.746328
Target:  5'- gUGAGCagacucguggugGCCGUCgGCGCcuggGCggUCAGc -3'
miRNA:   3'- -ACUCG------------CGGCAGgCGCGua--CGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 8498 0.76 0.341914
Target:  5'- cGGGCGCCGUCCGUGUggGCg----- -3'
miRNA:   3'- aCUCGCGGCAGGCGCGuaCGaaaguc -5'
6883 5' -56.1 NC_001875.2 + 16250 0.74 0.43506
Target:  5'- cGAG-GCCGUCaCGCGCGUGCg-UCAc -3'
miRNA:   3'- aCUCgCGGCAG-GCGCGUACGaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 44455 0.71 0.571856
Target:  5'- -aGGCGCCGUCgGCGCAgUGCgccaagUCGu -3'
miRNA:   3'- acUCGCGGCAGgCGCGU-ACGaa----AGUc -5'
6883 5' -56.1 NC_001875.2 + 99994 0.71 0.571856
Target:  5'- gGAGCGCUGUuaGCGCgGUGCUggUCGc -3'
miRNA:   3'- aCUCGCGGCAggCGCG-UACGAa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 85245 0.7 0.654779
Target:  5'- cGAGCGCgGguUCCGCGCucgGCg--CGGa -3'
miRNA:   3'- aCUCGCGgC--AGGCGCGua-CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 95740 0.7 0.654779
Target:  5'- -cGGCGCCG-CCGcCGCGUGCUg---- -3'
miRNA:   3'- acUCGCGGCaGGC-GCGUACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 80303 0.69 0.685794
Target:  5'- cGAGCGCCGUCgccaGCGCGUcCgagUCGu -3'
miRNA:   3'- aCUCGCGGCAGg---CGCGUAcGaa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 44008 0.69 0.696053
Target:  5'- cGGGCGCCGUgCccaGCGUGCUguaccgCAGc -3'
miRNA:   3'- aCUCGCGGCAgGcg-CGUACGAaa----GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.