miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 3' -49.2 NC_001875.2 + 109134 0.66 0.998455
Target:  5'- gCCAcaGUGGCGACG-ACUAGGgcgAgCCGa -3'
miRNA:   3'- -GGUa-CAUCGCUGUgUGAUUCa--UgGGC- -5'
6885 3' -49.2 NC_001875.2 + 27190 0.66 0.998455
Target:  5'- aCCGUcagGUGGC-ACGCGCUAGGaucgGCCUu -3'
miRNA:   3'- -GGUA---CAUCGcUGUGUGAUUCa---UGGGc -5'
6885 3' -49.2 NC_001875.2 + 104963 0.66 0.998455
Target:  5'- cUCGUGUgcGGCGGCGgGCU-GGUGCaCGg -3'
miRNA:   3'- -GGUACA--UCGCUGUgUGAuUCAUGgGC- -5'
6885 3' -49.2 NC_001875.2 + 33786 0.66 0.998455
Target:  5'- gCCGggGUGGUcuaGGCGCACU---UGCCCGu -3'
miRNA:   3'- -GGUa-CAUCG---CUGUGUGAuucAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 62377 0.66 0.998139
Target:  5'- gCCAggGaGGuCGACAUGCUGAGUcGCCgCGg -3'
miRNA:   3'- -GGUa-CaUC-GCUGUGUGAUUCA-UGG-GC- -5'
6885 3' -49.2 NC_001875.2 + 122560 0.66 0.997771
Target:  5'- aCAUGUauaucGGgGACGCGCgcgAGG-ACCUGg -3'
miRNA:   3'- gGUACA-----UCgCUGUGUGa--UUCaUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 39878 0.66 0.996848
Target:  5'- aCAgcccgGGCGACGCGCUGcaccauaGCCCGg -3'
miRNA:   3'- gGUaca--UCGCUGUGUGAUuca----UGGGC- -5'
6885 3' -49.2 NC_001875.2 + 69215 0.66 0.996795
Target:  5'- gCCAguacgcuUGUucgGGCGACGCGCgcuGUGCCg- -3'
miRNA:   3'- -GGU-------ACA---UCGCUGUGUGauuCAUGGgc -5'
6885 3' -49.2 NC_001875.2 + 114089 0.67 0.996219
Target:  5'- gCCGUGUccacaagcggcauGGCGACGCAC--AGcACCaCGg -3'
miRNA:   3'- -GGUACA-------------UCGCUGUGUGauUCaUGG-GC- -5'
6885 3' -49.2 NC_001875.2 + 83785 0.67 0.995631
Target:  5'- gCCAcucguUGUAGCG-CGCGCccucGUGCCUGu -3'
miRNA:   3'- -GGU-----ACAUCGCuGUGUGauu-CAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 39032 0.67 0.994813
Target:  5'- aCCGcGgcGCGGCacguuacGCugUAAGcUGCCCGa -3'
miRNA:   3'- -GGUaCauCGCUG-------UGugAUUC-AUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 69015 0.67 0.994054
Target:  5'- gCAcGUGGUGGCGCGCUGc---CCCGa -3'
miRNA:   3'- gGUaCAUCGCUGUGUGAUucauGGGC- -5'
6885 3' -49.2 NC_001875.2 + 102411 0.67 0.99311
Target:  5'- aCGUGUcGGCGuCGCGCUcgccGUugCCGa -3'
miRNA:   3'- gGUACA-UCGCuGUGUGAuu--CAugGGC- -5'
6885 3' -49.2 NC_001875.2 + 98896 0.68 0.991937
Target:  5'- aCAUGgcgAGCGGCGCgcaaACUGacgcgcucacgcaAGUGCUCGa -3'
miRNA:   3'- gGUACa--UCGCUGUG----UGAU-------------UCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 90044 0.68 0.989542
Target:  5'- gCCAUGUuGCaGCACuACaacGAGUGCCUGg -3'
miRNA:   3'- -GGUACAuCGcUGUG-UGa--UUCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 34344 0.68 0.989542
Target:  5'- uCUAUG-AGCGGCACAUUGccGGUAUCa- -3'
miRNA:   3'- -GGUACaUCGCUGUGUGAU--UCAUGGgc -5'
6885 3' -49.2 NC_001875.2 + 113876 0.68 0.988076
Target:  5'- uCCAgaGUGGgGACGCGCUGGcUGgCCGg -3'
miRNA:   3'- -GGUa-CAUCgCUGUGUGAUUcAUgGGC- -5'
6885 3' -49.2 NC_001875.2 + 43310 0.68 0.986625
Target:  5'- ---gGUAGCGGCGCGCgcgcgggucggcguGGUugCCGc -3'
miRNA:   3'- gguaCAUCGCUGUGUGau------------UCAugGGC- -5'
6885 3' -49.2 NC_001875.2 + 108962 0.68 0.986456
Target:  5'- gCCGUGUgcgauAGCGAUGCGCUGcagcacGGUGUCCa -3'
miRNA:   3'- -GGUACA-----UCGCUGUGUGAU------UCAUGGGc -5'
6885 3' -49.2 NC_001875.2 + 53486 0.68 0.986456
Target:  5'- cCCAUgGUGGUgGACGCGCUcAAGgACUCGg -3'
miRNA:   3'- -GGUA-CAUCG-CUGUGUGA-UUCaUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.