miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 5' -54.5 NC_001875.2 + 6290 1.08 0.003555
Target:  5'- gCCCGUGCGUCCAAUGCACCGCAACAAg -3'
miRNA:   3'- -GGGCACGCAGGUUACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 22817 0.77 0.342591
Target:  5'- gCCGUGCgGUCCGAcgGCACCGuCGGCGg -3'
miRNA:   3'- gGGCACG-CAGGUUa-CGUGGC-GUUGUu -5'
6885 5' -54.5 NC_001875.2 + 42500 0.73 0.544407
Target:  5'- gCCGU-CGUCCGcGUGCGCCGCAAa-- -3'
miRNA:   3'- gGGCAcGCAGGU-UACGUGGCGUUguu -5'
6885 5' -54.5 NC_001875.2 + 108962 0.73 0.575342
Target:  5'- gCCGUGUGcgauagCGAUGCGCUGCAGCAc -3'
miRNA:   3'- gGGCACGCag----GUUACGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 36285 0.73 0.575342
Target:  5'- aCgGaGCG-CCAAUGCGCCGCAGCc- -3'
miRNA:   3'- gGgCaCGCaGGUUACGUGGCGUUGuu -5'
6885 5' -54.5 NC_001875.2 + 41835 0.73 0.585748
Target:  5'- gUUGcGCGUCCAGUugccGCGCCGCGGCGg -3'
miRNA:   3'- gGGCaCGCAGGUUA----CGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 77914 0.73 0.585748
Target:  5'- aUCGUGCGcgCCAAcGCGCCcGCAACGg -3'
miRNA:   3'- gGGCACGCa-GGUUaCGUGG-CGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 20958 0.73 0.596189
Target:  5'- gCCGUccagcgcaaacGCGUCgCAAUGC-CCGCAGCGc -3'
miRNA:   3'- gGGCA-----------CGCAG-GUUACGuGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 57524 0.72 0.617147
Target:  5'- gCCCGUGCuGUCCGGcgccugcGCGCCGUAGgCGAu -3'
miRNA:   3'- -GGGCACG-CAGGUUa------CGUGGCGUU-GUU- -5'
6885 5' -54.5 NC_001875.2 + 44013 0.71 0.680031
Target:  5'- gCCGUGC--CCAGcgugcUGUACCGCAGCAc -3'
miRNA:   3'- gGGCACGcaGGUU-----ACGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 35784 0.7 0.731369
Target:  5'- uCCauaGUGCGUgCCGGUGCGCaCGCGcuugccGCGAa -3'
miRNA:   3'- -GGg--CACGCA-GGUUACGUG-GCGU------UGUU- -5'
6885 5' -54.5 NC_001875.2 + 116177 0.7 0.735395
Target:  5'- gCCGUGUGUCgAAuguguggcgugcgucUGCACCGCcuCAGg -3'
miRNA:   3'- gGGCACGCAGgUU---------------ACGUGGCGuuGUU- -5'
6885 5' -54.5 NC_001875.2 + 104151 0.7 0.741405
Target:  5'- uCCCGUggcgauagacGCGUCCGAcauUGUcaacuaucGCCGCGGCAu -3'
miRNA:   3'- -GGGCA----------CGCAGGUU---ACG--------UGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 8506 0.7 0.741405
Target:  5'- gUCCGUGUGggcgCCGc-GCACUGCAACGc -3'
miRNA:   3'- -GGGCACGCa---GGUuaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 112547 0.7 0.75134
Target:  5'- cCUCGUcCGUCCAAUGCAgCGUgAACGGa -3'
miRNA:   3'- -GGGCAcGCAGGUUACGUgGCG-UUGUU- -5'
6885 5' -54.5 NC_001875.2 + 90400 0.7 0.75134
Target:  5'- aCCG-GCG-CCuGUGCGCgCGCAGCGg -3'
miRNA:   3'- gGGCaCGCaGGuUACGUG-GCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 73036 0.7 0.760187
Target:  5'- uCCgCGUGCagcugggCCAAcucggcgcuguuuUGCGCCGCGACAGg -3'
miRNA:   3'- -GG-GCACGca-----GGUU-------------ACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 81059 0.69 0.770869
Target:  5'- -aCG-GCGUaauGGUGCGCCGCGACGAg -3'
miRNA:   3'- ggGCaCGCAgg-UUACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 39059 0.69 0.780442
Target:  5'- aCCGcaaGCGcauggCCAuuGUGCGCCGCGGCGu -3'
miRNA:   3'- gGGCa--CGCa----GGU--UACGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 54742 0.69 0.780442
Target:  5'- gCCGUGCGggcgcaCCGccgGCACCGcCAGCGc -3'
miRNA:   3'- gGGCACGCa-----GGUua-CGUGGC-GUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.